Variant report

Variant	rs17139607
Chromosome Location	chr5:115707792-115707793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10519452	1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17139604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863988	0.94[AFR][1000 genomes]
rs1896684	1.00[MEX][hapmap]
rs4308513	1.00[MEX][hapmap]
rs56168251	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57209700	0.94[EUR][1000 genomes]
rs57526524	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58291729	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58776100	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59909017	0.94[AFR][1000 genomes]
rs72808976	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72808977	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72808978	0.82[EUR][1000 genomes]
rs72808979	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72808981	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808984	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808985	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72808987	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808989	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808992	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv4968	chr5:115635771-115714856	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2763489	chr5:115693166-115733327	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115685000-115721400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr5:115694400-115707800	Weak transcription	Spleen	Spleen
3	chr5:115695800-115714600	Weak transcription	Thymus	Thymus
4	chr5:115696000-115708000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:115696400-115708400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:115697600-115708200	Weak transcription	Lung	lung
7	chr5:115697600-115712000	Weak transcription	Aorta	Aorta
8	chr5:115697600-115714000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:115697800-115708200	Weak transcription	Psoas Muscle	Psoas
11	chr5:115697800-115708400	Weak transcription	Colonic Mucosa	Colon
12	chr5:115698000-115722800	Weak transcription	Pancreas	Pancrea
13	chr5:115698400-115714000	Weak transcription	Right Ventricle	heart
14	chr5:115699400-115710200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:115705200-115713000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:115705600-115708200	Weak transcription	Esophagus	oesophagus
17	chr5:115705800-115708200	Weak transcription	Left Ventricle	heart
18	chr5:115706000-115708000	Enhancers	Fetal Kidney	kidney
19	chr5:115706000-115708400	Weak transcription	Right Atrium	heart
20	chr5:115706000-115708800	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:115706000-115708800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:115706000-115724400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:115706200-115708200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:115706200-115708800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:115706400-115707800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:115706400-115708200	Enhancers	Liver	Liver
27	chr5:115706600-115708600	Enhancers	Fetal Intestine Small	intestine
28	chr5:115706600-115708600	Enhancers	HepG2	liver
29	chr5:115706800-115711600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr5:115706800-115723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:115707000-115708200	Enhancers	HUVEC	blood vessel
32	chr5:115707000-115708200	Enhancers	K562	blood
33	chr5:115707000-115709600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr5:115707200-115708000	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:115707200-115708200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr5:115707200-115708600	Enhancers	Adipose Nuclei	Adipose
37	chr5:115707200-115708600	Enhancers	Fetal Thymus	thymus
38	chr5:115707200-115710600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr5:115707200-115711800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:115707200-115712800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:115707200-115717000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr5:115707400-115708200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr5:115707400-115708200	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr5:115707400-115708200	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:115707400-115708800	Enhancers	Brain Anterior Caudate	brain
46	chr5:115707400-115711200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr5:115707400-115711600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr5:115707400-115714400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr5:115707400-115717200	Weak transcription	Primary T cells from cord blood	blood
50	chr5:115707400-115722600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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