Variant report

Variant rs17139710
Chromosome Location chr6:5180536-5180537
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5145400-5180800 Weak transcription Fetal Intestine Small intestine
2 chr6:5163800-5189600 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr6:5170400-5181800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr6:5173000-5185400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr6:5173000-5190800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr6:5173200-5186000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr6:5173600-5181000 Weak transcription NHEK skin
8 chr6:5174000-5181000 Weak transcription Pancreas Pancrea
9 chr6:5174800-5180600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr6:5175400-5180600 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr6:5175400-5181000 Enhancers Primary T helper cells PMA-I stimulated --
12 chr6:5175600-5182000 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr6:5175600-5185800 Weak transcription Fetal Stomach stomach
14 chr6:5175800-5180800 Weak transcription Esophagus oesophagus
15 chr6:5175800-5193400 Weak transcription Brain Substantia Nigra brain
16 chr6:5176200-5181400 Weak transcription Primary monocytes fromperipheralblood blood
17 chr6:5176200-5181400 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr6:5176200-5181800 Weak transcription Left Ventricle heart
19 chr6:5176200-5181800 Weak transcription Spleen Spleen
20 chr6:5176200-5183800 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr6:5176200-5190600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr6:5176200-5192400 Weak transcription Fetal Muscle Trunk muscle
23 chr6:5176200-5201200 Weak transcription Fetal Muscle Leg muscle
24 chr6:5176200-5203600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr6:5176200-5239600 Weak transcription Thymus Thymus
26 chr6:5177800-5205200 Weak transcription Aorta Aorta
27 chr6:5178400-5180600 Enhancers Primary hematopoietic stem cells blood
28 chr6:5178400-5190800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr6:5178800-5180600 Enhancers Primary hematopoietic stem cells short term culture blood
30 chr6:5179200-5207600 Weak transcription Primary B cells from cord blood blood
31 chr6:5179400-5180600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr6:5179400-5180800 Enhancers Primary T cells from cord blood blood
33 chr6:5179800-5180800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr6:5179800-5183200 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr6:5179800-5190600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr6:5180000-5180600 Enhancers Brain Angular Gyrus brain
37 chr6:5180000-5180600 Enhancers Brain Anterior Caudate brain
38 chr6:5180000-5180600 Enhancers Brain Cingulate Gyrus brain
39 chr6:5180000-5182400 Enhancers A549 lung
40 chr6:5180000-5201000 Weak transcription Stomach Smooth Muscle stomach
41 chr6:5180200-5180600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
42 chr6:5180200-5180600 Enhancers Fetal Adrenal Gland Adrenal Gland
43 chr6:5180200-5180600 Enhancers HepG2 liver
44 chr6:5180200-5212200 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr6:5180400-5181200 Enhancers K562 blood
46 chr6:5180400-5183000 Enhancers Placenta Placenta
47 chr6:5180400-5193200 Weak transcription Brain Inferior Temporal Lobe brain

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