Variant report

Variant	rs17139894
Chromosome Location	chr7:18808829-18808830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10237427	0.83[AMR][1000 genomes]
rs17139854	0.83[AMR][1000 genomes]
rs55641428	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18765200-18810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:18787800-18810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:18802000-18809800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:18802400-18810800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:18807200-18811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:18807400-18809600	Enhancers	NH-A	brain
8	chr7:18807600-18812200	Enhancers	HSMM	muscle
9	chr7:18807600-18812400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:18807800-18809600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:18807800-18809600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:18807800-18810000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:18807800-18810000	Enhancers	Osteobl	bone
14	chr7:18807800-18810200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:18807800-18810600	Enhancers	HSMMtube	muscle
16	chr7:18807800-18812000	Enhancers	NHDF-Ad	bronchial
17	chr7:18808000-18811800	Weak transcription	Fetal Brain Female	brain
18	chr7:18808200-18809000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:18808200-18809600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:18808200-18823200	Weak transcription	Aorta	Aorta
21	chr7:18808800-18809000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:18808800-18810600	Enhancers	HMEC	breast
23	chr7:18808800-18811000	Enhancers	NHLF	lung
24	chr7:18808800-18811200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:18808800-18812000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:18808800-18812400	Enhancers	NHEK	skin

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