Variant report

Variant	rs17140021
Chromosome Location	chr5:115855201-115855202
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs153645	1.00[CHB][hapmap]
rs4920916	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9327005	0.82[CEU][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115839000-115855600	Weak transcription	Left Ventricle	heart
3	chr5:115839000-115856400	Weak transcription	HSMMtube	muscle
4	chr5:115839600-115859800	Weak transcription	Colonic Mucosa	Colon
5	chr5:115839800-115856400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr5:115841600-115858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:115845800-115856800	Weak transcription	Pancreas	Pancrea
8	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
9	chr5:115846200-115855600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:115847200-115859800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:115847800-115856800	Weak transcription	Psoas Muscle	Psoas
12	chr5:115848600-115864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:115849600-115857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:115850200-115855600	Enhancers	Brain Substantia Nigra	brain
15	chr5:115850600-115855800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:115850600-115855800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:115850800-115856400	Weak transcription	Right Atrium	heart
18	chr5:115850800-115856800	Weak transcription	Ovary	ovary
19	chr5:115851000-115855400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:115851000-115864000	Weak transcription	Small Intestine	intestine
21	chr5:115851600-115857000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:115851800-115856400	Weak transcription	Fetal Stomach	stomach
23	chr5:115852000-115856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:115852000-115857000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:115852200-115856400	Weak transcription	Adipose Nuclei	Adipose
26	chr5:115852600-115855400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:115852600-115856800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:115852600-115856800	Weak transcription	Fetal Lung	lung
29	chr5:115852800-115856600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:115852800-115856600	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:115853000-115857200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:115853000-115858000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:115853000-115858800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:115853200-115859000	Enhancers	Fetal Muscle Leg	muscle
35	chr5:115853400-115855400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:115853400-115855400	Enhancers	Brain Hippocampus Middle	brain
37	chr5:115853400-115855800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr5:115853400-115856000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:115853600-115856000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr5:115853800-115855400	Enhancers	Fetal Intestine Large	intestine
41	chr5:115854000-115855400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr5:115854000-115855600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:115854000-115857400	Enhancers	H9 Cell Line	embryonic stem cell
44	chr5:115854200-115855800	Enhancers	Fetal Intestine Small	intestine
45	chr5:115854200-115859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:115854400-115855800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr5:115854400-115858000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr5:115854600-115856000	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr5:115854600-115856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:115854600-115856400	Weak transcription	Placenta	Placenta

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