The 2.0 version of rSNPBase

Variant report

Variant rs17140144
Chromosome Location chr5:115903510-115903511
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115890600-115907800 Weak transcription Spleen Spleen
2 chr5:115890800-115907600 Weak transcription Colonic Mucosa Colon
3 chr5:115891000-115907600 Weak transcription Ovary ovary
4 chr5:115891200-115904600 Weak transcription Fetal Stomach stomach
5 chr5:115891400-115905200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr5:115896000-115904800 Weak transcription Duodenum Mucosa Duodenum
7 chr5:115896000-115905000 Weak transcription Psoas Muscle Psoas
8 chr5:115896000-115905200 Weak transcription Lung lung
9 chr5:115896000-115907600 Weak transcription Fetal Muscle Trunk muscle
10 chr5:115896400-115904200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:115896600-115905800 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr5:115897200-115909800 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
13 chr5:115898000-115903600 Enhancers Brain Angular Gyrus brain
14 chr5:115898400-115907400 Enhancers Fetal Adrenal Gland Adrenal Gland
15 chr5:115898600-115905200 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
16 chr5:115898800-115904200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr5:115898800-115904400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr5:115899800-115903600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr5:115900000-115904000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr5:115900200-115907400 Weak transcription Colon Smooth Muscle Colon
21 chr5:115900600-115907000 Weak transcription Stomach Smooth Muscle stomach
22 chr5:115901000-115908000 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
23 chr5:115901200-115907600 Weak transcription Pancreas Pancrea
24 chr5:115901800-115903800 Enhancers Sigmoid Colon Sigmoid Colon
25 chr5:115901800-115906600 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
26 chr5:115902000-115905200 Weak transcription Fetal Muscle Leg muscle
27 chr5:115902000-115906800 Weak transcription Rectal Smooth Muscle rectum
28 chr5:115902200-115903600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr5:115902200-115904000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr5:115902200-115904400 Weak transcription Fetal Brain Female brain
31 chr5:115902400-115904400 Weak transcription Fetal Lung lung
32 chr5:115902400-115906000 Enhancers HepG2 liver
33 chr5:115902600-115903600 Weak transcription Brain Hippocampus Middle brain
34 chr5:115902600-115904000 Weak transcription H9 Cell Line embryonic stem cell
35 chr5:115902600-115904200 Weak transcription Brain Anterior Caudate brain
36 chr5:115902600-115904200 Weak transcription Fetal Brain Male brain
37 chr5:115902600-115904400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:115902600-115904400 Weak transcription Brain Substantia Nigra brain
39 chr5:115902600-115904800 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr5:115902800-115904200 Weak transcription Fetal Intestine Large intestine
41 chr5:115902800-115904400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr5:115902800-115904400 Weak transcription Fetal Kidney kidney
43 chr5:115902800-115904600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr5:115902800-115905200 Weak transcription Placenta Placenta
45 chr5:115903000-115905000 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
46 chr5:115903000-115905400 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
47 chr5:115903000-115905600 Transcr. at gene 5' and 3' ES-I3 Cell Line embryonic stem cell
48 chr5:115903000-115906600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr5:115903200-115904200 Genic enhancers H1 Cell Line embryonic stem cell
50 chr5:115903200-115904600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015