Variant report

Variant	rs171403
Chromosome Location	chr1:71774105-71774106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1573060	1.00[AMR][1000 genomes]
rs189598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935564	1.00[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[AMR][1000 genomes]
rs2261391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2639327	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2639341	1.00[AMR][1000 genomes]
rs2694947	1.00[AMR][1000 genomes]
rs2694948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2796204	1.00[AMR][1000 genomes]
rs652791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932498	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1848377	chr1:71718838-71964514	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv531880	chr1:71724941-71964501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830159	chr1:71772308-71909860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71770600-71781200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:71773400-71774800	Weak transcription	Pancreas	Pancrea
3	chr1:71773600-71774600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:71773600-71777000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:71773600-71777000	Weak transcription	NHDF-Ad	bronchial
6	chr1:71773600-71778000	Weak transcription	HUVEC	blood vessel
7	chr1:71773800-71776800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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