Variant report

Variant	rs17140757
Chromosome Location	chr7:69119161-69119162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:2515862..2518355-chr7:69118525..69120604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157870	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17140791	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69106200-69121600	Weak transcription	Fetal Kidney	kidney
2	chr7:69109400-69119400	Weak transcription	Fetal Brain Female	brain
3	chr7:69109400-69121800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:69109800-69119200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:69110000-69119400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:69111000-69121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:69114400-69119200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:69114400-69119200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:69114400-69121800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:69114600-69119200	Weak transcription	Brain Angular Gyrus	brain
11	chr7:69114600-69119200	Weak transcription	Esophagus	oesophagus
12	chr7:69114600-69119200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:69114800-69121400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:69115800-69119200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:69116000-69119200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:69116200-69119600	Weak transcription	Right Atrium	heart
17	chr7:69116600-69119600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:69116800-69122600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr7:69117200-69120000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:69117600-69119200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:69117600-69120200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:69117800-69119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:69118000-69119400	Enhancers	Lung	lung
24	chr7:69118000-69120800	Enhancers	Fetal Heart	heart
25	chr7:69118000-69123000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:69118000-69125200	Enhancers	Fetal Lung	lung
27	chr7:69118200-69119200	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:69118200-69121800	Weak transcription	Fetal Intestine Small	intestine
29	chr7:69118200-69122800	Enhancers	Brain Germinal Matrix	brain
30	chr7:69118400-69119800	Enhancers	Primary hematopoietic stem cells	blood
31	chr7:69118400-69121000	Enhancers	Primary B cells from cord blood	blood
32	chr7:69118600-69119400	Enhancers	Psoas Muscle	Psoas
33	chr7:69118600-69120800	Enhancers	Fetal Thymus	thymus
34	chr7:69118600-69121200	Enhancers	Brain Anterior Caudate	brain
35	chr7:69118600-69121200	Enhancers	Left Ventricle	heart
36	chr7:69118600-69122600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:69118600-69122600	Enhancers	Fetal Muscle Leg	muscle
38	chr7:69118800-69120000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:69118800-69120000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:69118800-69120000	Enhancers	GM12878-XiMat	blood
41	chr7:69118800-69120000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr7:69118800-69121200	Enhancers	Ovary	ovary
43	chr7:69118800-69122600	Enhancers	Brain Hippocampus Middle	brain
44	chr7:69119000-69119200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
45	chr7:69119000-69119600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
46	chr7:69119000-69120000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr7:69119000-69120000	Enhancers	NHDF-Ad	bronchial
48	chr7:69119000-69120200	Enhancers	Adipose Nuclei	Adipose
49	chr7:69119000-69120200	Enhancers	Brain Substantia Nigra	brain
50	chr7:69119000-69120600	Enhancers	Fetal Brain Male	brain

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