Variant report

Variant	rs17140796
Chromosome Location	chr7:117725467-117725468
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10229271	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468283	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1468284	0.88[ASN][1000 genomes]
rs16873472	0.83[ASN][1000 genomes]
rs17140792	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140886	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17140956	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17140962	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17141146	0.88[AMR][1000 genomes]
rs2041529	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2041530	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2058419	0.83[ASN][1000 genomes]
rs2402299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6978482	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1026324	chr7:117707746-117734305	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019337	chr7:117707746-117739400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031419	chr7:117708734-117739400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117721800-117727000	Weak transcription	NHEK	skin
2	chr7:117721800-117727200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:117723600-117726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:117724800-117725800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:117725000-117725600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:117725000-117725600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:117725000-117725600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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