Variant report

Variant	rs17140932
Chromosome Location	chr3:68056396-68056397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6548943	0.87[ASN][1000 genomes]
rs73837230	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1013531	chr3:67917771-68070027	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3442201	chr3:67925312-68064610	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3338669	chr3:67925912-68064160	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3395568	chr3:67955462-68064660	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv876924	chr3:67978367-68063259	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68053200-68057600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:68053600-68056600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:68053600-68058000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr3:68054800-68057800	Active TSS	Brain Cingulate Gyrus	brain
5	chr3:68055600-68056400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:68055600-68056400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:68055600-68056600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
8	chr3:68055600-68057400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
9	chr3:68055600-68057600	Active TSS	Aorta	Aorta
10	chr3:68055800-68056400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
11	chr3:68055800-68057600	Active TSS	Brain Angular Gyrus	brain
12	chr3:68056000-68056800	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr3:68056000-68057000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:68056000-68057400	Active TSS	Brain Anterior Caudate	brain
15	chr3:68056200-68056400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr3:68056200-68056400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr3:68056200-68056400	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
18	chr3:68056200-68056400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:68056200-68056400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
20	chr3:68056200-68056400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr3:68056200-68056400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr3:68056200-68056400	Bivalent Enhancer	Fetal Kidney	kidney
23	chr3:68056200-68056400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
24	chr3:68056200-68056400	Enhancers	Stomach Mucosa	stomach
25	chr3:68056200-68056600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
26	chr3:68056200-68056600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr3:68056200-68056600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
28	chr3:68056200-68056600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:68056200-68056600	Active TSS	Fetal Brain Male	brain
30	chr3:68056200-68056800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr3:68056200-68056800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:68056200-68057000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:68056200-68057000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
34	chr3:68056200-68057200	Enhancers	Liver	Liver
35	chr3:68056200-68057400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr3:68056200-68057400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr3:68056200-68057600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr3:68056200-68057600	Active TSS	Brain Hippocampus Middle	brain
39	chr3:68056200-68057600	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr3:68056200-68057800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr3:68056200-68057800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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