The 2.0 version of rSNPBase

Variant report

Variant rs171411
Chromosome Location chr14:56649856-56649857
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:56635000-56654600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr14:56639200-56662000 Weak transcription Right Ventricle heart
3 chr14:56639400-56652800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr14:56639400-56659200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr14:56640000-56652400 Weak transcription Brain Substantia Nigra brain
6 chr14:56640000-56652600 Weak transcription Brain Anterior Caudate brain
7 chr14:56640000-56652800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr14:56640000-56659800 Weak transcription Fetal Intestine Large intestine
9 chr14:56640000-56661800 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr14:56640400-56661000 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr14:56640600-56655800 Weak transcription NHLF lung
12 chr14:56640800-56653000 Weak transcription Primary T cells from cord blood blood
13 chr14:56641000-56660800 Weak transcription Primary T helper cells fromperipheralblood blood
14 chr14:56643400-56662000 Weak transcription Spleen Spleen
15 chr14:56643600-56652800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr14:56643600-56655800 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr14:56643600-56662000 Weak transcription Fetal Kidney kidney
18 chr14:56644000-56652200 Weak transcription Brain Cingulate Gyrus brain
19 chr14:56644000-56662000 Weak transcription Rectal Smooth Muscle rectum
20 chr14:56644200-56652200 Weak transcription Brain Hippocampus Middle brain
21 chr14:56644200-56660600 Weak transcription Primary hematopoietic stem cells blood
22 chr14:56644800-56661000 Weak transcription Fetal Brain Female brain
23 chr14:56645200-56652800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr14:56645400-56660800 Weak transcription Lung lung
25 chr14:56645600-56652800 Weak transcription Fetal Intestine Small intestine
26 chr14:56645600-56654800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr14:56645600-56659800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr14:56645600-56661200 Weak transcription Fetal Stomach stomach
29 chr14:56645600-56662200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr14:56647200-56662000 Weak transcription Primary neutrophils fromperipheralblood blood
31 chr14:56647600-56652800 Enhancers Pancreatic Islets Pancreatic Islet
32 chr14:56647600-56662000 Weak transcription Left Ventricle heart
33 chr14:56647800-56650000 Weak transcription Muscle Satellite Cultured Cells --
34 chr14:56647800-56652800 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr14:56647800-56652800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr14:56647800-56657800 Weak transcription Fetal Thymus thymus
37 chr14:56648000-56661800 Weak transcription Primary monocytes fromperipheralblood blood
38 chr14:56648200-56659800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr14:56648200-56665400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr14:56648400-56656000 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr14:56649000-56652000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr14:56649000-56655600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr14:56649000-56659400 Weak transcription Brain Germinal Matrix brain
44 chr14:56649000-56660800 Weak transcription Fetal Brain Male brain
45 chr14:56649000-56660800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr14:56649000-56662200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr14:56649200-56654600 Weak transcription Thymus Thymus
48 chr14:56649200-56659800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr14:56649200-56661000 Weak transcription Primary B cells from cord blood blood
50 chr14:56649400-56652400 Weak transcription A549 lung

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Last update: Aug 31, 2015