Variant report

Variant	rs17141141
Chromosome Location	chr6:5674198-5674199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11243022	1.00[AFR][1000 genomes]
rs11243023	1.00[AFR][1000 genomes]
rs17141293	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5653200-5677600	Weak transcription	Gastric	stomach
2	chr6:5654600-5677600	Weak transcription	Pancreas	Pancrea
3	chr6:5665200-5677800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:5670800-5675800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:5671200-5674200	Enhancers	Fetal Thymus	thymus
6	chr6:5671400-5674200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:5671400-5674400	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:5671400-5675200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:5671600-5674200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:5671600-5674800	Enhancers	Psoas Muscle	Psoas
11	chr6:5671600-5674800	Enhancers	NHLF	lung
12	chr6:5671800-5680000	Weak transcription	HepG2	liver
13	chr6:5672000-5677400	Weak transcription	Fetal Heart	heart
14	chr6:5672200-5674200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:5672200-5674400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:5672200-5674600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:5672200-5674800	Enhancers	Adipose Nuclei	Adipose
18	chr6:5672200-5675000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr6:5672200-5679600	Weak transcription	Primary B cells from cord blood	blood
20	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
21	chr6:5672400-5676800	Weak transcription	Stomach Mucosa	stomach
22	chr6:5672400-5679200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:5672400-5685600	Weak transcription	Aorta	Aorta
24	chr6:5672600-5674200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:5672600-5678800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:5672600-5679800	Weak transcription	GM12878-XiMat	blood
27	chr6:5672600-5680000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr6:5672800-5675600	Enhancers	NHDF-Ad	bronchial
29	chr6:5673000-5674400	Enhancers	Fetal Lung	lung
30	chr6:5673000-5674800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:5673000-5676200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:5673200-5675200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:5673200-5675200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:5673200-5679400	Weak transcription	Fetal Kidney	kidney
35	chr6:5673200-5679800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:5673200-5680200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:5673400-5674200	Enhancers	Left Ventricle	heart
38	chr6:5673400-5675600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:5673400-5679600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:5673400-5679800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:5673600-5674600	Weak transcription	Osteobl	bone
42	chr6:5673600-5679200	Weak transcription	Spleen	Spleen
43	chr6:5673800-5674200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:5673800-5674600	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr6:5673800-5674800	Weak transcription	Brain Angular Gyrus	brain
46	chr6:5673800-5674800	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:5673800-5675000	Weak transcription	Fetal Brain Male	brain
48	chr6:5673800-5676600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:5673800-5676800	Weak transcription	HMEC	breast
50	chr6:5673800-5676800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links