Variant report

Variant	rs17141735
Chromosome Location	chr7:70005609-70005610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10224955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10248310	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10268257	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28589463	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4404815	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56110507	1.00[EUR][1000 genomes]
rs6978484	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv532783	chr7:69939570-70245396	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3341834	chr7:69968031-70288098	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532784	chr7:69969631-70204548	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025522	chr7:69971452-70173513	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17141735	ARC	trans	brain	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69983800-70009400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr7:69988800-70007600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:69992400-70006600	Weak transcription	Right Ventricle	heart
4	chr7:69995200-70007800	Weak transcription	Adipose Nuclei	Adipose
5	chr7:69995400-70012200	Weak transcription	Fetal Stomach	stomach
6	chr7:69995800-70007200	Weak transcription	HSMMtube	muscle
7	chr7:69996800-70017800	Weak transcription	Aorta	Aorta
8	chr7:69999000-70007400	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:70000200-70015400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:70003800-70006000	Enhancers	Brain Anterior Caudate	brain
11	chr7:70004000-70006000	Enhancers	Fetal Brain Female	brain
12	chr7:70004000-70007800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr7:70004200-70007400	Weak transcription	Psoas Muscle	Psoas
14	chr7:70004200-70009600	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70004400-70008400	Weak transcription	Left Ventricle	heart
16	chr7:70004600-70005800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:70005000-70006600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:70005200-70007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:70005400-70006000	Weak transcription	Brain Angular Gyrus	brain
20	chr7:70005400-70006400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr7:70005600-70006000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr7:70005600-70006000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:70005600-70006200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:70005600-70006200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:70005600-70006400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:70005600-70006400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:70005600-70006400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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