Variant report

Variant	rs17141773
Chromosome Location	chr7:70042675-70042676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70041903..70043590-chr7:70046514..70049488,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11760213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768709	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773257	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv532783	chr7:69939570-70245396	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3341834	chr7:69968031-70288098	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532784	chr7:69969631-70204548	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025522	chr7:69971452-70173513	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1032378	chr7:70010392-70190353	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538929	chr7:70010392-70190353	Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024498	chr7:70016323-70190353	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538930	chr7:70016323-70190353	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1024524	chr7:70031241-70138924	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70024000-70046400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:70034000-70048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:70034800-70047600	Weak transcription	Fetal Lung	lung
4	chr7:70035200-70045000	Weak transcription	Right Atrium	heart
5	chr7:70035400-70047200	Weak transcription	Ovary	ovary
6	chr7:70035800-70045200	Weak transcription	Left Ventricle	heart
7	chr7:70036600-70047600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:70036800-70045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:70036800-70060800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:70037200-70045000	Weak transcription	Fetal Stomach	stomach
11	chr7:70037400-70048200	Weak transcription	Fetal Intestine Large	intestine
12	chr7:70037800-70049200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:70038600-70059600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:70039600-70045000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:70039600-70045000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:70039800-70060600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:70040200-70045000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:70040400-70045000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:70040800-70048400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr7:70041000-70044400	Weak transcription	Fetal Kidney	kidney
21	chr7:70041000-70047400	Weak transcription	Fetal Heart	heart
22	chr7:70041200-70044600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:70041200-70044600	Weak transcription	HSMM	muscle
24	chr7:70041400-70043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:70041400-70044600	Weak transcription	NHEK	skin
26	chr7:70041400-70044800	Weak transcription	HSMMtube	muscle
27	chr7:70041400-70045000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:70041600-70047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:70042000-70044600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:70042000-70047800	Weak transcription	Fetal Brain Female	brain
31	chr7:70042000-70048200	Weak transcription	Fetal Brain Male	brain
32	chr7:70042000-70048600	Weak transcription	Brain Anterior Caudate	brain
33	chr7:70042200-70044600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links