Variant report
| Variant | rs17141818 |
|---|---|
| Chromosome Location | chr7:19753149-19753150 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SMC3 | chr7:19753082-19754215 | SK-N-SH | brain: | n/a | chr7:19753483-19753497 |
| 2 | CTCF | chr7:19753000-19753150 | NHDF-neo | bronchial: | n/a | n/a |
| 3 | CTCF | chr7:19753120-19753270 | HMEC | breast: | n/a | n/a |
| 4 | CTCF | chr7:19753080-19753230 | GM12878 | blood: | n/a | n/a |
| 5 | CTCF | chr7:19753020-19753170 | AoAF | blood vessel: | n/a | n/a |
| 6 | CTCF | chr7:19753000-19753150 | GM06990 | blood: | n/a | n/a |
| 7 | CTCF | chr7:19753120-19753270 | GM12873 | blood: | n/a | n/a |
| 8 | CTCF | chr7:19752840-19754066 | SK-N-SH | brain: | n/a | chr7:19753640-19753653 chr7:19753482-19753498 chr7:19753481-19753499 chr7:19753483-19753504 |
| 9 | CTCF | chr7:19753040-19753190 | HPF | lung: | n/a | n/a |
| 10 | RAD21 | chr7:19753041-19753849 | SK-N-SH | brain: | n/a | chr7:19753482-19753501 |
| 11 | CTCF | chr7:19752910-19753951 | A549 | lung: | n/a | chr7:19753640-19753653 chr7:19753482-19753498 chr7:19753481-19753499 chr7:19753483-19753504 |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TWISTNB | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs13347380 | 1.00[AMR][1000 genomes] |
| rs17141841 | 1.00[AMR][1000 genomes] |
| rs17141847 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1990095 | 1.00[AMR][1000 genomes] |
| rs56141177 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57486625 | 1.00[AMR][1000 genomes] |
| rs57507425 | 1.00[AMR][1000 genomes] |
| rs58597160 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59285007 | 1.00[AMR][1000 genomes] |
| rs73680520 | 1.00[AMR][1000 genomes] |
| rs73680669 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680670 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680671 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680687 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680697 | 1.00[AMR][1000 genomes] |
| rs73682804 | 1.00[AMR][1000 genomes] |
| rs73682826 | 1.00[AMR][1000 genomes] |
| rs73682827 | 1.00[AMR][1000 genomes] |
| rs73682831 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033223 | chr7:19682192-20461375 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv538795 | chr7:19682192-20461375 | Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv524807 | chr7:19714156-19803925 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv830918 | chr7:19747674-19914527 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19749600-19753200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
