Variant report
| Variant | rs17141819 |
|---|---|
| Chromosome Location | chr7:19753321-19753322 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:42)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:42 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:19751944..19753996-chr7:19755724..19758618,2 | K562 | blood: | |
| 2 | chr7:19752993..19753942-chr7:20637906..20638730,2 | K562 | blood: | |
| 3 | chr7:19753307..19753925-chr7:20350842..20351776,2 | MCF-7 | breast: | |
| 4 | chr7:19753290..19754082-chr7:20637859..20638360,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TWISTNB | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11972146 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17141832 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17141835 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs17354985 | 1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs17355138 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17355404 | 0.92[EUR][1000 genomes] |
| rs17452153 | 1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs17452368 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17452423 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17452574 | 0.92[EUR][1000 genomes] |
| rs17452630 | 0.92[EUR][1000 genomes] |
| rs2072186 | 0.89[YRI][hapmap] |
| rs6948318 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033223 | chr7:19682192-20461375 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv538795 | chr7:19682192-20461375 | Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv524807 | chr7:19714156-19803925 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv830918 | chr7:19747674-19914527 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19753200-19753800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
