Variant report

Variant	rs17142860
Chromosome Location	chr7:120256104-120256105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120255038..120256549-chr7:120260668..120263169,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10156125	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10224280	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10224891	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10227379	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10228326	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10234674	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10239065	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10245675	1.00[EUR][1000 genomes]
rs10247657	1.00[EUR][1000 genomes]
rs10248007	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10253512	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10257987	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10259436	1.00[EUR][1000 genomes]
rs10262476	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10265695	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10270560	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10270911	1.00[EUR][1000 genomes]
rs10272979	1.00[EUR][1000 genomes]
rs10273127	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10277086	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10278264	1.00[EUR][1000 genomes]
rs10282150	1.00[EUR][1000 genomes]
rs10488302	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11536582	1.00[EUR][1000 genomes]
rs12111645	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12111791	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12171571	1.00[EUR][1000 genomes]
rs13438753	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1609181	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16870516	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17142844	1.00[EUR][1000 genomes]
rs17142852	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17142856	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17283053	1.00[EUR][1000 genomes]
rs17347436	1.00[EUR][1000 genomes]
rs17355253	1.00[EUR][1000 genomes]
rs2049643	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28454884	0.95[EUR][1000 genomes]
rs60967957	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466749	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6970111	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs73441852	1.00[EUR][1000 genomes]
rs7357256	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9886093	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9886190	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120252600-120257000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120255000-120257800	Enhancers	GM12878-XiMat	blood

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