Variant report

Variant	rs17144015
Chromosome Location	chr7:71291716-71291717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13240414	1.00[AMR][1000 genomes]
rs16869571	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17144061	1.00[MEX][hapmap]
rs59576744	1.00[AMR][1000 genomes]
rs60401333	1.00[AMR][1000 genomes]
rs6460691	1.00[MEX][hapmap]
rs6967053	1.00[MEX][hapmap]
rs73360101	1.00[AMR][1000 genomes]
rs73362104	1.00[AMR][1000 genomes]
rs73362111	1.00[AMR][1000 genomes]
rs844737	1.00[MEX][hapmap]
rs844782	1.00[MEX][hapmap]
rs844784	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71275800-71300000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:71286200-71293600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:71290600-71292400	Strong transcription	Thymus	Thymus
4	chr7:71291000-71293200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:71291200-71292200	Enhancers	Fetal Thymus	thymus
6	chr7:71291400-71292200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:71291600-71292400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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