Variant report
| Variant | rs17144289 |
|---|---|
| Chromosome Location | chr7:21377482-21377483 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12667180 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12667518 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12671297 | 1.00[AMR][1000 genomes] |
| rs12672762 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12674300 | 1.00[AMR][1000 genomes] |
| rs16872749 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16872771 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17144165 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17144175 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17144266 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17144309 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17144314 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17144318 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1987514 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2108311 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34111257 | 1.00[AMR][1000 genomes] |
| rs4719659 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4721987 | 1.00[AMR][1000 genomes] |
| rs4721989 | 1.00[AMR][1000 genomes] |
| rs4721990 | 1.00[AMR][1000 genomes] |
| rs58578432 | 1.00[AMR][1000 genomes] |
| rs60488575 | 1.00[AMR][1000 genomes] |
| rs6970515 | 1.00[EUR][1000 genomes] |
| rs6980287 | 1.00[EUR][1000 genomes] |
| rs73682328 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73685049 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3478244 | chr7:21044211-21417347 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3478245 | chr7:21044211-21417347 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016705 | chr7:21257416-21450943 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21377000-21378800 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
| 2 | chr7:21377400-21378800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
