Variant report
| Variant | rs17145044 |
|---|---|
| Chromosome Location | chr7:21739552-21739553 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr7:21739342-21739622 | HepG2 | liver: | n/a | chr7:21739465-21739476 chr7:21739465-21739481 chr7:21739465-21739480 chr7:21739465-21739476 |
| 2 | MAFF | chr7:21739355-21739646 | HepG2 | liver: | n/a | chr7:21739463-21739481 |
| 3 | MAFK | chr7:21739321-21739641 | IMR90 | lung: | n/a | chr7:21739465-21739476 chr7:21739465-21739481 chr7:21739465-21739480 chr7:21739465-21739476 |
| 4 | MAFK | chr7:21739315-21739614 | HepG2 | liver: | n/a | chr7:21739465-21739476 chr7:21739465-21739481 chr7:21739465-21739480 chr7:21739465-21739476 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:21739013..21741392-chr7:21743576..21745490,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DNAH11 | TF binding region |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs16872855 | 0.90[EUR][1000 genomes] |
| rs17145080 | 1.00[EUR][1000 genomes] |
| rs17145127 | 0.90[EUR][1000 genomes] |
| rs57309975 | 0.83[EUR][1000 genomes] |
| rs73682679 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5655 | chr7:21728469-21773203 | Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
