Variant report

Variant	rs17145802
Chromosome Location	chr7:21910108-21910109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11976832	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17145807	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62445889	0.92[EUR][1000 genomes]
rs62445891	0.84[EUR][1000 genomes]
rs62445892	0.84[EUR][1000 genomes]
rs62445899	0.85[EUR][1000 genomes]
rs67401326	1.00[EUR][1000 genomes]
rs73279872	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7778522	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21904600-21910400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:21904600-21910600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:21905000-21910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:21905000-21910800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:21905200-21910200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:21905600-21916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:21905800-21916200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:21906400-21910200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr7:21906600-21910600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:21906600-21916200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:21906800-21916200	Weak transcription	Primary B cells from cord blood	blood
12	chr7:21906800-21916200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:21907200-21910200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:21907400-21916000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:21907400-21937200	Weak transcription	Fetal Thymus	thymus
16	chr7:21907800-21910200	Enhancers	Fetal Heart	heart
17	chr7:21907800-21916200	Weak transcription	Thymus	Thymus
18	chr7:21908000-21910200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:21908000-21910400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:21908400-21910200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:21908400-21936600	Weak transcription	Primary T cells from cord blood	blood
22	chr7:21908600-21910200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:21908800-21910600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:21908800-21916200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:21908800-21916200	Weak transcription	Fetal Intestine Small	intestine
26	chr7:21908800-21921200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:21909200-21910200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:21909200-21913600	Weak transcription	Gastric	stomach
29	chr7:21910000-21912800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart

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