The 2.0 version of rSNPBase

Variant report

Variant rs17146277
Chromosome Location chr7:22160279-22160280
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22143400-22161400 Weak transcription Right Ventricle heart
2 chr7:22149800-22177600 Weak transcription H1 Cell Line embryonic stem cell
3 chr7:22150000-22161400 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr7:22150000-22177800 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr7:22150200-22173200 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr7:22150400-22161800 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr7:22150400-22164400 Weak transcription Fetal Kidney kidney
8 chr7:22150800-22162000 Weak transcription Fetal Muscle Leg muscle
9 chr7:22150800-22163000 Weak transcription Stomach Mucosa stomach
10 chr7:22153000-22193000 Strong transcription Dnd41 blood
11 chr7:22153400-22161400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr7:22154000-22160400 Strong transcription Fetal Intestine Small intestine
13 chr7:22154400-22162800 Weak transcription NHEK skin
14 chr7:22154400-22169800 Weak transcription Fetal Muscle Trunk muscle
15 chr7:22154600-22161600 Strong transcription Thymus Thymus
16 chr7:22154800-22160400 Weak transcription Adipose Nuclei Adipose
17 chr7:22154800-22160400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr7:22155000-22161200 Weak transcription HUVEC blood vessel
19 chr7:22155200-22161400 Weak transcription Right Atrium heart
20 chr7:22155600-22178200 Weak transcription H9 Cell Line embryonic stem cell
21 chr7:22156000-22167600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr7:22156000-22181000 Weak transcription Gastric stomach
23 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
24 chr7:22156600-22161800 Strong transcription Fetal Thymus thymus
25 chr7:22156800-22161600 Strong transcription Left Ventricle heart
26 chr7:22156800-22186400 Strong transcription Liver Liver
27 chr7:22157200-22162400 Strong transcription Fetal Intestine Large intestine
28 chr7:22157200-22163200 Strong transcription Pancreas Pancrea
29 chr7:22157200-22164600 Weak transcription Primary B cells from cord blood blood
30 chr7:22157400-22161800 Weak transcription GM12878-XiMat blood
31 chr7:22157600-22162000 Strong transcription Spleen Spleen
32 chr7:22157600-22162800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr7:22157800-22161000 Weak transcription Esophagus oesophagus
34 chr7:22157800-22174600 Weak transcription Colonic Mucosa Colon
35 chr7:22158200-22161600 Strong transcription Fetal Adrenal Gland Adrenal Gland
36 chr7:22158200-22161800 Strong transcription Lung lung
37 chr7:22158600-22163200 Genic enhancers Brain Substantia Nigra brain
38 chr7:22158800-22160400 Genic enhancers Brain Cingulate Gyrus brain
39 chr7:22158800-22161000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr7:22158800-22161600 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr7:22158800-22162800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr7:22158800-22163000 Strong transcription Rectal Mucosa Donor 29 rectum
43 chr7:22158800-22166000 Strong transcription Rectal Mucosa Donor 31 rectum
44 chr7:22159000-22161600 Weak transcription Primary T cells from cord blood blood
45 chr7:22159000-22167400 Weak transcription HMEC breast
46 chr7:22159200-22161800 Weak transcription Primary B cells from peripheral blood blood
47 chr7:22159200-22163400 Strong transcription Duodenum Mucosa Duodenum
48 chr7:22159400-22160400 Genic enhancers Brain Inferior Temporal Lobe brain
49 chr7:22159600-22160600 Strong transcription Sigmoid Colon Sigmoid Colon
50 chr7:22159800-22161800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015