The 2.0 version of rSNPBase

Variant report

Variant rs17146306
Chromosome Location chr7:22173347-22173348
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22149800-22177600 Weak transcription H1 Cell Line embryonic stem cell
2 chr7:22150000-22177800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr7:22153000-22193000 Strong transcription Dnd41 blood
4 chr7:22155600-22178200 Weak transcription H9 Cell Line embryonic stem cell
5 chr7:22156000-22181000 Weak transcription Gastric stomach
6 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
7 chr7:22156800-22186400 Strong transcription Liver Liver
8 chr7:22157800-22174600 Weak transcription Colonic Mucosa Colon
9 chr7:22159800-22175800 Weak transcription HSMMtube muscle
10 chr7:22159800-22214000 Weak transcription Small Intestine intestine
11 chr7:22160000-22173600 Strong transcription HepG2 liver
12 chr7:22160400-22183000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr7:22162000-22174800 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr7:22162200-22181400 Weak transcription Primary T cells from cord blood blood
15 chr7:22162200-22186600 Weak transcription GM12878-XiMat blood
16 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
17 chr7:22162400-22177800 Weak transcription Fetal Muscle Leg muscle
18 chr7:22163000-22179000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr7:22163000-22187800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr7:22163000-22190600 Strong transcription Fetal Thymus thymus
21 chr7:22163200-22178800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr7:22163200-22181000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr7:22163200-22186800 Weak transcription Right Atrium heart
24 chr7:22163600-22179000 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr7:22164200-22173800 Strong transcription Duodenum Mucosa Duodenum
26 chr7:22165000-22174200 Weak transcription Psoas Muscle Psoas
27 chr7:22165400-22183400 Weak transcription Primary B cells from cord blood blood
28 chr7:22166200-22178000 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr7:22168000-22176200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr7:22168000-22178000 Weak transcription Adipose Nuclei Adipose
31 chr7:22168000-22195800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr7:22168000-22195800 Weak transcription NHEK skin
33 chr7:22169200-22176200 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr7:22169400-22186600 Weak transcription Stomach Smooth Muscle stomach
35 chr7:22169800-22174400 Weak transcription HUVEC blood vessel
36 chr7:22169800-22178800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr7:22169800-22180600 Weak transcription Fetal Kidney kidney
38 chr7:22169800-22181000 Weak transcription Right Ventricle heart
39 chr7:22170000-22177600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr7:22170200-22175000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr7:22170200-22176400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr7:22170200-22177600 Weak transcription Fetal Intestine Small intestine
43 chr7:22170400-22177800 Weak transcription Fetal Brain Female brain
44 chr7:22170800-22174000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr7:22171000-22174400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr7:22171800-22173400 Strong transcription Spleen Spleen
47 chr7:22172000-22173400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr7:22172000-22173400 Genic enhancers Brain Anterior Caudate brain
49 chr7:22172200-22173400 Genic enhancers Brain Hippocampus Middle brain
50 chr7:22172200-22173400 Genic enhancers Brain Substantia Nigra brain

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Last update: Aug 31, 2015