Variant report

Variant	rs17146746
Chromosome Location	chr5:119874629-119874630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:119870688..119872446-chr5:119874411..119876714,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10050881	1.00[MEX][hapmap]
rs17146687	1.00[MEX][hapmap]
rs17146756	1.00[AMR][1000 genomes]
rs17146779	1.00[MEX][hapmap]
rs2691096	1.00[MEX][hapmap]
rs300972	1.00[AMR][1000 genomes]
rs73786515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv948613	chr5:119861955-119999008	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv599602	chr5:119866504-120023393	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv949499	chr5:119869763-119999008	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv882787	chr5:119874306-119925692	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
2	chr5:119867200-119879800	Weak transcription	Left Ventricle	heart
3	chr5:119874000-119875000	Enhancers	NH-A	brain
4	chr5:119874000-119876400	Enhancers	HMEC	breast
5	chr5:119874200-119874800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:119874200-119874800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:119874200-119874800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:119874200-119874800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr5:119874200-119874800	Flanking Active TSS	NHLF	lung
10	chr5:119874200-119874800	Flanking Active TSS	Osteobl	bone
11	chr5:119874200-119875000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr5:119874200-119875800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:119874400-119874800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:119874400-119874800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:119874400-119874800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr5:119874400-119875000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:119874400-119875000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:119874400-119875000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:119874400-119875400	Enhancers	HSMM	muscle
20	chr5:119874400-119875400	Enhancers	HSMMtube	muscle
21	chr5:119874400-119876200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:119874400-119876600	Enhancers	Fetal Heart	heart
23	chr5:119874600-119875800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:119874600-119876400	Enhancers	NHDF-Ad	bronchial
25	chr5:119874600-119877000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links