Variant report

Variant	rs17146948
Chromosome Location	chr11:83853038-83853039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11233900	1.00[CEU][hapmap]
rs17146588	1.00[CEU][hapmap]
rs4944485	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3463509	chr11:83850358-83856029	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3463520	chr11:83850404-83856006	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463497	chr11:83850425-83855976	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463531	chr11:83850495-83855894	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83849400-83856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83850200-83853600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83851600-83855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:83851600-83856000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83851800-83855800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:83851800-83856800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:83852000-83853200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:83852000-83853400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:83852000-83853400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:83852000-83853600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:83852000-83854600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:83852200-83853400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:83852200-83853400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:83852600-83854800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:83852800-83854600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:83852800-83855200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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