Variant report

Variant	rs17147370
Chromosome Location	chr7:124359585-124359586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10954044	1.00[EUR][1000 genomes]
rs12540017	1.00[EUR][1000 genomes]
rs2190101	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34925644	1.00[EUR][1000 genomes]
rs35375994	1.00[EUR][1000 genomes]
rs6466957	1.00[EUR][1000 genomes]
rs6947126	1.00[EUR][1000 genomes]
rs6947166	1.00[EUR][1000 genomes]
rs6969185	1.00[EUR][1000 genomes]
rs7809070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124352000-124363800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:124353400-124360200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:124353400-124360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:124353600-124364200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:124354000-124359800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:124355200-124362600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:124358200-124362200	Weak transcription	Brain Angular Gyrus	brain
8	chr7:124358400-124361800	Weak transcription	NHLF	lung
9	chr7:124358400-124362600	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:124358600-124362200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:124358600-124365200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:124359000-124363800	Weak transcription	Liver	Liver
13	chr7:124359200-124360200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:124359200-124362400	Weak transcription	A549	lung
15	chr7:124359400-124359600	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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