Variant report

Variant	rs17147500
Chromosome Location	chr7:124450058-124450059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17147459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17147631	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35028211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124445000-124463800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124445800-124450200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:124445800-124450200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:124445800-124454400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:124448600-124450200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:124448800-124450200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:124448800-124450200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:124449600-124450200	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:124449800-124450800	Enhancers	Adipose Nuclei	Adipose
10	chr7:124450000-124451000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:124450000-124451400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:124450000-124452800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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