Variant report

Variant	rs17147822
Chromosome Location	chr11:84668848-84668849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501577	1.00[AMR][1000 genomes]
rs10501578	1.00[AMR][1000 genomes]
rs10501588	1.00[AMR][1000 genomes]
rs17147566	1.00[AMR][1000 genomes]
rs17147572	0.82[LWK][hapmap];1.00[AMR][1000 genomes]
rs17147579	1.00[AMR][1000 genomes]
rs17147591	1.00[AMR][1000 genomes]
rs17147593	1.00[AMR][1000 genomes]
rs17147605	1.00[AMR][1000 genomes]
rs17147612	1.00[AMR][1000 genomes]
rs17147636	1.00[AMR][1000 genomes]
rs17147637	1.00[AMR][1000 genomes]
rs17147647	0.82[LWK][hapmap];1.00[AMR][1000 genomes]
rs17147664	1.00[AMR][1000 genomes]
rs17147670	1.00[AMR][1000 genomes]
rs17147680	1.00[AMR][1000 genomes]
rs17147720	1.00[AMR][1000 genomes]
rs17147901	1.00[AMR][1000 genomes]
rs17808971	0.91[YRI][hapmap]
rs4329710	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84668800-84669000	Enhancers	Fetal Stomach	stomach

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