Variant report

Variant	rs17149104
Chromosome Location	chr11:68192630-68192631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:68186432..68189427-chr11:68190382..68193146,3	K562	blood:
2	chr11:68187966..68189893-chr11:68191523..68193340,2	MCF-7	breast:
3	chr11:68179782..68183196-chr11:68190274..68193170,4	MCF-7	breast:
4	chr11:68189901..68192045-chr11:68192194..68195213,3	MCF-7	breast:
5	chr11:68189170..68193221-chr11:68199268..68202860,4	MCF-7	breast:
6	chr11:68180583..68185146-chr11:68190126..68194877,4	K562	blood:
7	chr11:68165701..68168619-chr11:68192290..68194513,2	K562	blood:
8	chr11:68192236..68194475-chr11:68203551..68205457,2	K562	blood:
9	chr11:68033931..68036846-chr11:68191183..68193954,2	K562	blood:

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11228237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1127291	0.89[EUR][1000 genomes]
rs12296049	0.83[YRI][hapmap]
rs4988333	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61005984	0.89[EUR][1000 genomes]
rs73516891	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1039671	chr11:68120571-68206630	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv897861	chr11:68129606-68196830	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv469965	chr11:68140781-68217420	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv468618	chr11:68171013-68231240	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
17	nsv555286	chr11:68192346-68207287	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68148600-68196800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:68157200-68196600	Weak transcription	NH-A	brain
3	chr11:68167800-68196600	Weak transcription	Fetal Brain Male	brain
4	chr11:68168600-68193600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:68168600-68195600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:68169000-68193600	Strong transcription	Fetal Intestine Small	intestine
7	chr11:68169400-68196600	Weak transcription	Right Atrium	heart
8	chr11:68169600-68196800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:68174400-68192800	Strong transcription	Fetal Intestine Large	intestine
10	chr11:68174400-68195800	Weak transcription	Primary B cells from cord blood	blood
11	chr11:68174600-68196800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:68175600-68196000	Strong transcription	Brain Germinal Matrix	brain
13	chr11:68176000-68210400	Strong transcription	HepG2	liver
14	chr11:68178400-68197000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:68181200-68194400	Strong transcription	Fetal Stomach	stomach
16	chr11:68181200-68196600	Strong transcription	Duodenum Mucosa	Duodenum
17	chr11:68181400-68196800	Strong transcription	Gastric	stomach
18	chr11:68181800-68194200	Weak transcription	Fetal Kidney	kidney
19	chr11:68182000-68196800	Strong transcription	Liver	Liver
20	chr11:68182000-68196800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:68182000-68196800	Weak transcription	HMEC	breast
22	chr11:68182000-68204400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr11:68182400-68196600	Strong transcription	Adipose Nuclei	Adipose
24	chr11:68182600-68193000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:68182600-68193000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:68182600-68196800	Weak transcription	NHLF	lung
27	chr11:68182800-68193400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:68182800-68193400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:68182800-68196000	Strong transcription	Thymus	Thymus
30	chr11:68182800-68196400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:68182800-68196600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:68182800-68222200	Weak transcription	Small Intestine	intestine
33	chr11:68183200-68196600	Strong transcription	Lung	lung
34	chr11:68184200-68195800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:68184600-68193200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:68184600-68194200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:68184600-68196600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:68184600-68196600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:68184800-68193400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:68184800-68196200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:68184800-68196600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:68184800-68196600	Weak transcription	HUVEC	blood vessel
43	chr11:68184800-68196800	Weak transcription	HSMM	muscle
44	chr11:68186000-68195800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:68186000-68196600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr11:68187200-68193000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:68187600-68196000	Strong transcription	Fetal Brain Female	brain
48	chr11:68189000-68196600	Strong transcription	Esophagus	oesophagus
49	chr11:68189200-68193200	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr11:68189400-68193200	Genic enhancers	Fetal Muscle Leg	muscle

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