Variant report

Variant	rs17149325
Chromosome Location	chr11:86417553-86417554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86411235..86420303-chr11:86507153..86518645,29	MCF-7	breast:
2	chr11:86415734..86419675-chr11:86447085..86451465,5	MCF-7	breast:
3	chr11:86411982..86413840-chr11:86417333..86419243,2	MCF-7	breast:
4	chr11:86382194..86382963-chr11:86417211..86417823,3	MCF-7	breast:
5	chr11:86416820..86418116-chr11:86487036..86487889,7	MCF-7	breast:
6	chr11:86415214..86417568-chr11:86518757..86520683,2	MCF-7	breast:
7	chr11:86378621..86386201-chr11:86413884..86420246,14	MCF-7	breast:
8	chr11:86410023..86412517-chr11:86415107..86418270,6	MCF-7	breast:
9	chr11:86414005..86419352-chr11:86508550..86514510,10	MCF-7	breast:
10	chr11:86416820..86418116-chr11:86487134..86487889,4	MCF-7	breast:
11	chr11:86417268..86418020-chr11:86486992..86487573,2	MCF-7	breast:
12	chr11:86416368..86418805-chr11:86451504..86453400,2	MCF-7	breast:
13	chr11:86415971..86417723-chr11:86486189..86487721,2	MCF-7	breast:
14	chr11:86414473..86417898-chr11:86484349..86489062,8	MCF-7	breast:
15	chr11:86413087..86415733-chr11:86417276..86419673,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254731	Chromatin interaction
ENSG00000150687	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501625	0.81[GIH][hapmap]
rs12099044	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17149305	0.89[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149308	0.89[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149311	0.89[CEU][hapmap];0.96[GIH][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149318	0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs17149319	1.00[CEU][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149320	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149326	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149329	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs483538	1.00[ASN][1000 genomes]
rs55862210	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59227416	0.92[EUR][1000 genomes]
rs61248687	0.84[EUR][1000 genomes]
rs622079	0.82[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs73518365	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73518368	1.00[ASN][1000 genomes]
rs7940187	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17149325	C11orf73	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
3	chr11:86408000-86431400	Weak transcription	Aorta	Aorta
4	chr11:86410600-86419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:86410800-86419400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:86410800-86420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86411000-86428000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86411000-86429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:86412400-86418800	Enhancers	Colon Smooth Muscle	Colon
10	chr11:86414000-86418000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:86414400-86419800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:86414800-86418000	Enhancers	Ovary	ovary
13	chr11:86415000-86418600	Enhancers	Rectal Smooth Muscle	rectum
14	chr11:86416200-86418600	Enhancers	Stomach Smooth Muscle	stomach
15	chr11:86416600-86417800	Weak transcription	Fetal Stomach	stomach
16	chr11:86416600-86421000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:86417000-86418000	Enhancers	K562	blood
18	chr11:86417000-86418200	Enhancers	HepG2	liver
19	chr11:86417200-86417600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr11:86417200-86418000	Flanking Active TSS	A549	lung
21	chr11:86417400-86418000	Enhancers	Fetal Lung	lung
22	chr11:86417400-86418800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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