Variant report

Variant	rs17150028
Chromosome Location	chr7:87533769-87533770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87533476..87536222-chr7:87537318..87539544,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17160359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv888696	chr7:87526944-87594188	Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87506600-87534400	Weak transcription	Gastric	stomach
2	chr7:87506600-87535200	Weak transcription	Esophagus	oesophagus
3	chr7:87506600-87536800	Weak transcription	Lung	lung
4	chr7:87506600-87539600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:87506600-87539600	Weak transcription	Pancreas	Pancrea
6	chr7:87506800-87540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:87507000-87536400	Weak transcription	Placenta	Placenta
8	chr7:87507200-87534000	Weak transcription	Brain Angular Gyrus	brain
9	chr7:87507200-87537000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:87507200-87538400	Weak transcription	Adipose Nuclei	Adipose
11	chr7:87507200-87539200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:87507600-87539400	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:87508000-87535400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:87508000-87535800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:87508000-87537400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:87508000-87538200	Weak transcription	Thymus	Thymus
17	chr7:87508200-87537400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:87508200-87538400	Weak transcription	Fetal Brain Female	brain
19	chr7:87508200-87538600	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:87508200-87539000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:87508200-87539200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:87508200-87539400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:87508200-87539600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:87508400-87534200	Weak transcription	Small Intestine	intestine
25	chr7:87508400-87536000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:87508600-87538600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:87508800-87538000	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:87510400-87538600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:87511800-87537400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:87512800-87537400	Strong transcription	Dnd41	blood
31	chr7:87513600-87538000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:87515200-87538600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:87515200-87538600	Weak transcription	Fetal Kidney	kidney
34	chr7:87515600-87536800	Weak transcription	Psoas Muscle	Psoas
35	chr7:87516600-87539600	Weak transcription	Spleen	Spleen
36	chr7:87517600-87536000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr7:87517600-87538600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:87518600-87536400	Weak transcription	Fetal Heart	heart
39	chr7:87519000-87536800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:87521400-87537400	Strong transcription	K562	blood
41	chr7:87522000-87538600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:87522800-87535800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:87522800-87538600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:87523000-87535800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:87523200-87536800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:87523400-87538600	Strong transcription	Fetal Thymus	thymus
47	chr7:87524000-87536800	Weak transcription	Aorta	Aorta
48	chr7:87525000-87538400	Weak transcription	NHLF	lung
49	chr7:87525400-87537400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:87526600-87535600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links