Variant report

Variant	rs171507
Chromosome Location	chr4:152878150-152878151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs165579	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs360909	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs360911	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs360913	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs360914	0.96[ASN][1000 genomes]
rs360916	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs360917	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs360950	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360951	1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs360953	0.96[ASN][1000 genomes]
rs360954	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs361147	0.96[ASN][1000 genomes]
rs361148	0.96[ASN][1000 genomes]
rs361149	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152873000-152878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:152873600-152878200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152873600-152878200	Weak transcription	Fetal Brain Male	brain
4	chr4:152875800-152878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:152876600-152878200	Enhancers	Hela-S3	cervix
6	chr4:152877200-152878400	Weak transcription	NH-A	brain
7	chr4:152877200-152878800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:152877200-152879000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:152877200-152881800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:152877400-152878600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:152877400-152879000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:152877400-152879000	Enhancers	HepG2	liver
13	chr4:152877400-152883800	Enhancers	Fetal Heart	heart
14	chr4:152877600-152879000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:152877600-152879000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:152877600-152879000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:152877800-152878200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:152877800-152879000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:152877800-152879000	Enhancers	HSMMtube	muscle
20	chr4:152877800-152879200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:152878000-152878200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:152878000-152878200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:152878000-152878400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr4:152878000-152883000	Weak transcription	Brain Angular Gyrus	brain

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