Variant report

Variant	rs17150787
Chromosome Location	chr10:6168192-6168193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6166112..6169238-chr10:6173042..6175733,3	K562	blood:
2	chr10:6164842..6170645-chr10:6170879..6175262,7	K562	blood:
3	chr10:6157111..6159833-chr10:6166707..6168327,2	MCF-7	breast:
4	chr10:6150676..6151669-chr10:6167991..6168860,2	MCF-7	breast:
5	chr10:6167871..6170657-chr10:6186915..6188419,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11256899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11256909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905816	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906349	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6157000-6170800	Weak transcription	Gastric	stomach
2	chr10:6157600-6170400	Weak transcription	Lung	lung
3	chr10:6157600-6170400	Weak transcription	Thymus	Thymus
4	chr10:6157600-6171000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:6157600-6172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:6157800-6170800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:6158200-6168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:6158400-6169400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:6158600-6170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:6158600-6170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:6159000-6170400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:6159000-6170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:6159200-6170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:6159200-6170400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:6159200-6170400	Weak transcription	NH-A	brain
16	chr10:6159200-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:6159200-6170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:6159200-6170600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:6159400-6170200	Weak transcription	Primary T cells from cord blood	blood
20	chr10:6159400-6172000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:6160000-6170200	Weak transcription	Fetal Thymus	thymus
22	chr10:6161800-6170200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:6161800-6170400	Weak transcription	Left Ventricle	heart
24	chr10:6162600-6170200	Weak transcription	Right Ventricle	heart
25	chr10:6163000-6168200	Weak transcription	Fetal Kidney	kidney
26	chr10:6163000-6170400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:6163000-6170400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:6163000-6171200	Weak transcription	Esophagus	oesophagus
29	chr10:6163200-6170200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:6163200-6170200	Weak transcription	NHLF	lung
31	chr10:6165800-6168200	Enhancers	HSMM	muscle
32	chr10:6165800-6170600	Weak transcription	HSMMtube	muscle
33	chr10:6166000-6168400	Weak transcription	Fetal Lung	lung
34	chr10:6166200-6168400	Enhancers	Brain Angular Gyrus	brain
35	chr10:6166200-6170200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:6166400-6168400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:6166600-6168200	Enhancers	A549	lung
38	chr10:6166800-6168800	Weak transcription	Spleen	Spleen
39	chr10:6167000-6168200	Weak transcription	Colonic Mucosa	Colon
40	chr10:6167000-6168200	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:6167000-6168200	Weak transcription	Psoas Muscle	Psoas
42	chr10:6167000-6169200	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr10:6167000-6169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:6167000-6170000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:6167000-6170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:6167000-6170400	Weak transcription	Right Atrium	heart
47	chr10:6167000-6170400	Weak transcription	NHDF-Ad	bronchial
48	chr10:6167000-6170400	Weak transcription	NHEK	skin
49	chr10:6167000-6171000	Weak transcription	HUVEC	blood vessel
50	chr10:6167000-6172000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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