Variant report

Variant	rs17151238
Chromosome Location	chr7:78275795-78275796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485909	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11760911	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11770702	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11772194	0.86[ASN][1000 genomes]
rs12668335	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12669908	1.00[JPT][hapmap]
rs1319590	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1496774	0.85[JPT][hapmap]
rs17151130	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17151134	1.00[JPT][hapmap]
rs17151138	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17151148	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17151159	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17151184	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17151226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17151281	0.89[AMR][1000 genomes]
rs17442142	0.85[JPT][hapmap]
rs1859934	0.89[AMR][1000 genomes]
rs4730412	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464597	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv607656	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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