Variant report

Variant	rs17151291
Chromosome Location	chr8:10053688-10053689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17151287	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151299	1.00[EUR][1000 genomes]
rs6990362	0.84[EUR][1000 genomes]
rs7822782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10050000-10057800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:10050000-10068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:10050400-10054600	Weak transcription	HMEC	breast
4	chr8:10050400-10054600	Weak transcription	NHEK	skin
5	chr8:10050400-10055000	Weak transcription	HSMMtube	muscle
6	chr8:10050400-10058000	Weak transcription	Aorta	Aorta
7	chr8:10050600-10054800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:10050600-10055000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:10050800-10053800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:10051600-10058400	Enhancers	Fetal Brain Male	brain
11	chr8:10052200-10053800	Enhancers	Liver	Liver
12	chr8:10052200-10054000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:10052200-10056200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:10052400-10058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:10053200-10054000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10053400-10053800	Enhancers	Spleen	Spleen
17	chr8:10053400-10054200	Enhancers	Fetal Muscle Trunk	muscle
18	chr8:10053600-10053800	Enhancers	Brain Substantia Nigra	brain
19	chr8:10053600-10053800	Enhancers	Left Ventricle	heart
20	chr8:10053600-10054000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr8:10053600-10054000	Enhancers	Brain Angular Gyrus	brain
22	chr8:10053600-10054600	Weak transcription	Fetal Brain Female	brain
23	chr8:10053600-10062400	Weak transcription	Pancreas	Pancrea
24	chr8:10053600-10065000	Weak transcription	Brain Germinal Matrix	brain

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