Variant report

Variant	rs17151292
Chromosome Location	chr7:127411102-127411103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127390841..127392796-chr7:127409472..127412228,2	K562	blood:
2	chr7:127410218..127412934-chr7:127422329..127425135,2	MCF-7	breast:
3	chr7:127402917..127404639-chr7:127409550..127411362,2	K562	blood:
4	chr7:127297314..127299232-chr7:127410523..127413406,2	K562	blood:
5	chr7:127401749..127405329-chr7:127409862..127412962,3	K562	blood:
6	chr7:127405359..127407780-chr7:127410087..127411975,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2402869	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs35223517	1.00[AMR][1000 genomes]
rs6948423	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6969827	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1030387	chr7:127348973-127455890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1793220	chr7:127400473-127413555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127375400-127417400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:127378200-127412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:127379200-127437400	Weak transcription	Fetal Stomach	stomach
4	chr7:127382000-127473000	Weak transcription	Hela-S3	cervix
5	chr7:127393200-127422800	Weak transcription	Fetal Thymus	thymus
6	chr7:127395400-127422200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:127395800-127437200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:127396400-127422200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:127401000-127422000	Weak transcription	Small Intestine	intestine
10	chr7:127401000-127422400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:127401000-127427000	Weak transcription	HepG2	liver
12	chr7:127401000-127447600	Weak transcription	Fetal Intestine Large	intestine
13	chr7:127401000-127447800	Weak transcription	Fetal Intestine Small	intestine
14	chr7:127402800-127422200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:127403800-127433400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:127405400-127412400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:127407000-127411200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:127407000-127411600	Enhancers	HSMM	muscle
19	chr7:127407000-127411600	Enhancers	Osteobl	bone
20	chr7:127407400-127411600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:127407400-127419800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:127407400-127420200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:127407400-127439200	Weak transcription	Primary T cells from cord blood	blood
24	chr7:127407400-127447600	Weak transcription	Dnd41	blood
25	chr7:127407600-127411200	Weak transcription	Colon Smooth Muscle	Colon
26	chr7:127407600-127412200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:127407600-127415600	Weak transcription	NHEK	skin
28	chr7:127407600-127422000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:127407600-127428800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:127408000-127411400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:127408000-127411400	Enhancers	NH-A	brain
32	chr7:127408000-127418600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:127408000-127421000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:127408000-127421000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:127408000-127421800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:127408200-127419600	Weak transcription	Esophagus	oesophagus
37	chr7:127408200-127422200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:127408400-127411400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:127408400-127426400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:127408600-127418000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:127408600-127418600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:127408600-127418600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:127408600-127419000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:127408600-127422200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:127408800-127411400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr7:127408800-127411600	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr7:127408800-127411600	Enhancers	NHDF-Ad	bronchial
48	chr7:127409000-127411600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:127409000-127411600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:127409000-127411800	Enhancers	Brain Hippocampus Middle	brain

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