Variant report

Variant	rs17151668
Chromosome Location	chr7:127659290-127659291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127657571..127659586-chr7:127661972..127664018,2	K562	blood:
2	chr7:127651652..127655831-chr7:127659275..127661755,4	K562	blood:
3	chr7:127651063..127656520-chr7:127658090..127661426,7	K562	blood:
4	chr7:127659087..127661420-chr7:127663957..127667056,3	K562	blood:
5	chr7:127658157..127661100-chr7:127671141..127673434,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128594	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10487499	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487502	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154492	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155421	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375023	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531847	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532894	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533765	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12534918	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537331	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs12706816	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706818	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12706820	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706821	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706822	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706823	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227201	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229973	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231367	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246200	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246286	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345283	1.00[ASN][1000 genomes]
rs1362898	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419970	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468701	0.82[EUR][1000 genomes]
rs17151466	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151488	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151507	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151639	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17151653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151682	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151707	0.89[ASW][hapmap];0.83[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17151739	0.85[GIH][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes]
rs17676654	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34026100	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34688920	1.00[ASN][1000 genomes]
rs35154268	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41464647	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs55660321	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489175	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467157	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67827668	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948605	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953231	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959487	1.00[ASN][1000 genomes]
rs6962635	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73232968	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73232972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238078	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238088	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73239704	0.86[AMR][1000 genomes]
rs741094	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7458839	0.81[EUR][1000 genomes]
rs7785596	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809182	0.89[CEU][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs7810024	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649512	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127631800-127660800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:127635600-127660600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:127635800-127660600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:127636000-127662400	Weak transcription	NHDF-Ad	bronchial
5	chr7:127641600-127670400	Weak transcription	Colonic Mucosa	Colon
6	chr7:127644000-127660200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:127644000-127668800	Weak transcription	Dnd41	blood
8	chr7:127644000-127670200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr7:127644800-127667400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:127644800-127670800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:127645000-127684000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr7:127645200-127661800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:127645400-127670000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:127646000-127660400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:127650000-127659800	Strong transcription	K562	blood
16	chr7:127651600-127659800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:127651800-127659600	Strong transcription	HepG2	liver
18	chr7:127651800-127660600	Weak transcription	Left Ventricle	heart
19	chr7:127651800-127661600	Strong transcription	Fetal Intestine Small	intestine
20	chr7:127651800-127664400	Weak transcription	Right Ventricle	heart
21	chr7:127651800-127665600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:127651800-127667600	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:127651800-127668800	Weak transcription	Ovary	ovary
24	chr7:127651800-127670600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:127652000-127660600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:127653000-127661000	Weak transcription	A549	lung
27	chr7:127653200-127668800	Weak transcription	Thymus	Thymus
28	chr7:127653400-127661200	Weak transcription	NHLF	lung
29	chr7:127653400-127662400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:127653600-127660600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:127654600-127660600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr7:127654600-127669200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:127654800-127664200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:127655200-127660000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr7:127656600-127660000	Strong transcription	NHEK	skin
36	chr7:127656600-127660400	Enhancers	Brain Anterior Caudate	brain
37	chr7:127656600-127662200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr7:127657000-127659400	Enhancers	Liver	Liver
39	chr7:127657000-127660200	Enhancers	Brain Hippocampus Middle	brain
40	chr7:127657000-127661600	Enhancers	Brain Angular Gyrus	brain
41	chr7:127657000-127661600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:127657000-127662000	Strong transcription	Primary T cells from cord blood	blood
43	chr7:127657000-127664600	Strong transcription	GM12878-XiMat	blood
44	chr7:127657000-127670200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:127657200-127659400	Enhancers	Esophagus	oesophagus
46	chr7:127657200-127659600	Strong transcription	Hela-S3	cervix
47	chr7:127657200-127660000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr7:127657200-127660200	Enhancers	Lung	lung
49	chr7:127657200-127660400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:127657200-127660800	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links