Variant report

Variant	rs17151977
Chromosome Location	chr7:127942634-127942635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:127940454-127943118	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127940082..127943532-chr7:127944561..127947795,4	K562	blood:
2	chr7:127940151..127942923-chr7:127964464..127966540,2	MCF-7	breast:
3	chr7:127941056..127943858-chr7:127948197..127950566,3	K562	blood:
4	chr7:127937053..127939817-chr7:127940949..127943521,2	K562	blood:
5	chr7:127941056..127943858-chr7:127948197..127950137,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM28-3	chr7:127937738-127947816	NONHSAT123178

No data

Variant related genes	Relation type
ENSG00000242261	TF binding region
ENSG00000242261	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10251133	0.81[EUR][1000 genomes]
rs1026189	0.81[EUR][1000 genomes]
rs1466145	0.81[EUR][1000 genomes]
rs16871983	0.81[EUR][1000 genomes]
rs17151951	0.81[EUR][1000 genomes]
rs17151956	0.90[EUR][1000 genomes]
rs17151961	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17151967	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2122628	0.81[EUR][1000 genomes]
rs2402886	0.81[EUR][1000 genomes]
rs28437662	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41281734	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4731439	0.81[EUR][1000 genomes]
rs57006226	0.90[EUR][1000 genomes]
rs57272364	0.90[EUR][1000 genomes]
rs57403126	0.81[EUR][1000 genomes]
rs59168227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61733108	1.00[EUR][1000 genomes]
rs6952457	0.81[EUR][1000 genomes]
rs7778230	0.81[EUR][1000 genomes]
rs7778254	0.90[EUR][1000 genomes]
rs921399	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016669	chr7:127927963-127948122	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017782	chr7:127928249-127946901	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1019036	chr7:127928441-127948122	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018630	chr7:127928441-127948604	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2764054	chr7:127928453-127948604	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv525319	chr7:127929271-127946173	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127917000-127945600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:127917200-127943200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:127920200-127945200	Weak transcription	Right Ventricle	heart
4	chr7:127921800-127944400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:127922000-127944400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:127922200-127943000	Weak transcription	Dnd41	blood
7	chr7:127922200-127943200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:127923800-127943200	Weak transcription	Pancreas	Pancrea
9	chr7:127924200-127943800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:127924600-127950000	Weak transcription	Psoas Muscle	Psoas
11	chr7:127926400-127943200	Weak transcription	HSMM	muscle
12	chr7:127927000-127943200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:127927000-127944400	Weak transcription	Ovary	ovary
14	chr7:127928800-127944400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:127930800-127949200	Weak transcription	Fetal Kidney	kidney
16	chr7:127931800-127943200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:127935800-127943200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:127937400-127944400	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:127938200-127943000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:127938600-127943200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:127938600-127944400	Weak transcription	Placenta	Placenta
22	chr7:127938600-127945800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:127938800-127944000	Weak transcription	Brain Substantia Nigra	brain
24	chr7:127938800-127946000	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:127939000-127943000	Weak transcription	Primary B cells from cord blood	blood
26	chr7:127939200-127943400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:127939400-127943200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:127939400-127943200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:127939400-127943200	Weak transcription	Colonic Mucosa	Colon
30	chr7:127939400-127943200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:127939400-127943400	Weak transcription	Gastric	stomach
32	chr7:127939400-127943400	Weak transcription	K562	blood
33	chr7:127939400-127945400	Weak transcription	Esophagus	oesophagus
34	chr7:127939400-127946200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:127939400-127962800	Weak transcription	Right Atrium	heart
36	chr7:127939600-127943000	Weak transcription	Fetal Intestine Large	intestine
37	chr7:127939600-127943200	Weak transcription	Fetal Thymus	thymus
38	chr7:127939600-127944200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:127939600-127944400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:127939600-127944400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:127939600-127982200	Weak transcription	Stomach Mucosa	stomach
42	chr7:127939800-127943400	Weak transcription	Fetal Lung	lung
43	chr7:127940000-127944400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:127940000-127946600	Weak transcription	Fetal Heart	heart
45	chr7:127940000-127980800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr7:127940200-127953000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr7:127940200-127953800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr7:127940200-127955600	Strong transcription	Fetal Stomach	stomach
49	chr7:127940400-127943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:127940400-127945400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links