Variant report

Variant	rs17152073
Chromosome Location	chr11:57509690-57509691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:57508432..57511977-chr11:57530270..57533342,3	MCF-7	breast:
2	chr11:57440494..57443306-chr11:57507739..57511429,4	K562	blood:
3	chr11:57507833..57511012-chr11:57515890..57519512,4	MCF-7	breast:
4	chr11:57508174..57510185-chr11:57528141..57530575,2	K562	blood:
5	chr11:57478095..57482223-chr11:57507421..57512003,5	K562	blood:
6	chr11:57508102..57510467-chr11:57518136..57520066,2	MCF-7	breast:
7	chr11:57478095..57481312-chr11:57507421..57511942,8	K562	blood:
8	chr11:57416509..57419295-chr11:57509568..57512318,2	K562	blood:
9	chr11:57431371..57436913-chr11:57505728..57511660,10	K562	blood:
10	chr11:57478057..57480948-chr11:57506438..57510938,4	MCF-7	breast:
11	chr11:57508686..57513679-chr11:57564628..57569734,7	K562	blood:
12	chr11:57508369..57511140-chr11:57577565..57580322,2	MCF-7	breast:
13	chr11:57423749..57426682-chr11:57508630..57510179,2	K562	blood:
14	chr11:57434290..57436913-chr11:57507221..57510395,5	K562	blood:
15	chr11:57508846..57511581-chr11:57547881..57549731,2	K562	blood:
16	chr11:57104191..57107029-chr11:57508169..57510390,2	MCF-7	breast:
17	chr11:57507427..57512619-chr11:57528805..57534217,7	K562	blood:
18	chr11:57508922..57509774-chr5:61708521..61709172,2	Hela-S3	cervix:
19	chr11:57439534..57442360-chr11:57509028..57511429,2	K562	blood:
20	chr11:57478353..57481972-chr11:57506953..57510365,5	MCF-7	breast:
21	chr11:57508825..57509823-chr5:41904248..41904792,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000205765	Chromatin interaction
ENSG00000172409	Chromatin interaction
ENSG00000156599	Chromatin interaction
ENSG00000254462	Chromatin interaction
ENSG00000109991	Chromatin interaction
ENSG00000233436	Chromatin interaction
ENSG00000166793	Chromatin interaction
ENSG00000156603	Chromatin interaction
ENSG00000086200	Chromatin interaction
ENSG00000213593	Chromatin interaction
ENSG00000198561	Chromatin interaction
ENSG00000254602	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11570238	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12419044	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57508200-57509800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:57508200-57509800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:57508200-57509800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:57508200-57509800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:57508200-57509800	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr11:57508200-57509800	Active TSS	Fetal Kidney	kidney
7	chr11:57508200-57510000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:57508200-57510000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:57508200-57510000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:57508200-57510000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:57508200-57510000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:57508200-57510000	Active TSS	Psoas Muscle	Psoas
13	chr11:57508200-57510000	Active TSS	NHDF-Ad	bronchial
14	chr11:57508200-57510600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:57508400-57509800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr11:57508400-57509800	Active TSS	Aorta	Aorta
17	chr11:57508400-57509800	Active TSS	Fetal Lung	lung
18	chr11:57508400-57509800	Active TSS	Sigmoid Colon	Sigmoid Colon
19	chr11:57508400-57509800	Active TSS	Small Intestine	intestine
20	chr11:57508400-57509800	Active TSS	HepG2	liver
21	chr11:57508400-57509800	Active TSS	HSMM	muscle
22	chr11:57508400-57510000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:57508400-57510000	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr11:57508400-57510000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:57508400-57510000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:57508400-57510000	Active TSS	Fetal Intestine Small	intestine
27	chr11:57508400-57510000	Active TSS	Left Ventricle	heart
28	chr11:57508400-57510000	Active TSS	Lung	lung
29	chr11:57508400-57510000	Active TSS	Ovary	ovary
30	chr11:57508400-57510200	Active TSS	H9 Cell Line	embryonic stem cell
31	chr11:57508400-57510200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:57508400-57510200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:57508400-57510200	Active TSS	NHLF	lung
34	chr11:57508400-57510400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:57508400-57510400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:57508600-57509800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:57508600-57509800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:57508600-57509800	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:57508600-57509800	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr11:57508600-57509800	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr11:57508600-57509800	Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr11:57508600-57509800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr11:57508600-57509800	Active TSS	Colon Smooth Muscle	Colon
44	chr11:57508600-57509800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr11:57508600-57509800	Active TSS	A549	lung
46	chr11:57508600-57509800	Active TSS	Hela-S3	cervix
47	chr11:57508600-57509800	Active TSS	HUVEC	blood vessel
48	chr11:57508600-57510000	Active TSS	H1 Cell Line	embryonic stem cell
49	chr11:57508600-57510000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:57508600-57510000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links