Variant report

Variant	rs17152931
Chromosome Location	chr5:124895711-124895712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124893901..124896559-chr5:124897191..124899383,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17152945	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882827	chr5:124867823-124943901	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124893600-124896800	Enhancers	Stomach Mucosa	stomach
2	chr5:124893800-124895800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124893800-124896000	Enhancers	HSMM	muscle
4	chr5:124893800-124896600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124893800-124896600	Enhancers	HUVEC	blood vessel
6	chr5:124893800-124896800	Enhancers	HMEC	breast
7	chr5:124893800-124896800	Enhancers	NHEK	skin
8	chr5:124894000-124896600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:124894000-124896600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:124894200-124895800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:124894200-124897000	Enhancers	Osteobl	bone
12	chr5:124894400-124895800	Enhancers	Fetal Heart	heart
13	chr5:124894400-124896400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:124894400-124896800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:124894400-124897200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:124894800-124896000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr5:124894800-124896600	Enhancers	NHDF-Ad	bronchial
18	chr5:124894800-124896800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:124894800-124896800	Enhancers	NHLF	lung
20	chr5:124895000-124895800	Enhancers	A549	lung
21	chr5:124895000-124896000	Enhancers	Hela-S3	cervix
22	chr5:124895000-124896600	Enhancers	Gastric	stomach
23	chr5:124895000-124897000	Enhancers	NH-A	brain
24	chr5:124895600-124895800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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