Variant report

Variant	rs17152957
Chromosome Location	chr7:53664088-53664089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11972357	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11974813	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11975558	1.00[EUR][1000 genomes]
rs12111713	1.00[EUR][1000 genomes]
rs12112835	0.86[AFR][1000 genomes]
rs55671620	0.88[AFR][1000 genomes]
rs60542993	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6951348	0.80[AFR][1000 genomes]
rs6954107	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53655600-53671400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:53662800-53664600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:53663000-53664200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:53663400-53664200	Enhancers	Colon Smooth Muscle	Colon
5	chr7:53663400-53664400	Enhancers	NHEK	skin
6	chr7:53663400-53664600	Enhancers	HMEC	breast
7	chr7:53663400-53666800	Enhancers	Rectal Smooth Muscle	rectum
8	chr7:53663600-53664200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:53663600-53664200	Enhancers	Ovary	ovary
10	chr7:53663600-53664400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:53663600-53664600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:53663600-53664600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:53663600-53664600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:53663800-53664200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:53663800-53664600	Enhancers	HUVEC	blood vessel
16	chr7:53663800-53670400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:53664000-53664400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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