Variant report

Variant	rs17153118
Chromosome Location	chr8:11156288-11156289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11147995..11150025-chr8:11154798..11157623,2	K562	blood:
2	chr8:11148525..11151324-chr8:11155864..11158358,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1047950	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10503420	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11250131	1.00[JPT][hapmap]
rs11784572	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12676062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12676613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13260727	1.00[JPT][hapmap]
rs1435277	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1435282	1.00[JPT][hapmap]
rs17153088	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2060463	0.82[EUR][1000 genomes]
rs2246606	1.00[JPT][hapmap]
rs2249804	1.00[JPT][hapmap]
rs2250028	1.00[JPT][hapmap]
rs2251473	0.80[ASN][1000 genomes]
rs2409756	1.00[JPT][hapmap]
rs2572382	1.00[JPT][hapmap]
rs2572385	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2572386	1.00[JPT][hapmap]
rs2572397	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2572398	1.00[JPT][hapmap]
rs2736264	0.80[ASN][1000 genomes]
rs2736290	1.00[JPT][hapmap]
rs2736292	1.00[JPT][hapmap]
rs2736295	1.00[JPT][hapmap]
rs2736310	1.00[CHB][hapmap]
rs2736311	1.00[JPT][hapmap]
rs35418978	0.80[ASN][1000 genomes]
rs3824211	0.94[ASW][hapmap];0.88[CEU][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4532565	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841525	1.00[JPT][hapmap]
rs6601585	1.00[JPT][hapmap]
rs7009053	1.00[CHB][hapmap]
rs7010143	1.00[CHB][hapmap]
rs7017941	0.85[EUR][1000 genomes]
rs7832747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836248	0.94[ASW][hapmap];0.88[CEU][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs892793	0.88[CEU][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv831233	chr8:11046854-11234384	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1033312	chr8:11126800-11252170	Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17153118	FDFT1	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11143000-11162200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:11143000-11166400	Weak transcription	Esophagus	oesophagus
3	chr8:11143000-11166400	Weak transcription	Pancreas	Pancrea
4	chr8:11143400-11163600	Weak transcription	Brain Angular Gyrus	brain
5	chr8:11143400-11166400	Weak transcription	HSMMtube	muscle
6	chr8:11143800-11169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:11144000-11163200	Weak transcription	Right Ventricle	heart
8	chr8:11144600-11165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:11145000-11157400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:11146400-11162400	Weak transcription	Lung	lung
11	chr8:11146600-11162400	Weak transcription	Gastric	stomach
12	chr8:11146600-11163600	Weak transcription	Fetal Intestine Small	intestine
13	chr8:11146800-11162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:11146800-11166200	Weak transcription	Spleen	Spleen
15	chr8:11147600-11162400	Weak transcription	Brain Substantia Nigra	brain
16	chr8:11147600-11165800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:11147600-11166400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:11149800-11162200	Weak transcription	Stomach Mucosa	stomach
19	chr8:11150000-11159400	Weak transcription	Aorta	Aorta
20	chr8:11150200-11162400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:11150800-11157200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:11150800-11169800	Weak transcription	Small Intestine	intestine
23	chr8:11151800-11156800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:11152000-11168200	Weak transcription	Fetal Heart	heart
25	chr8:11152000-11169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:11152400-11161800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:11152600-11159600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr8:11152800-11157600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:11152800-11159600	Strong transcription	Adipose Nuclei	Adipose
30	chr8:11152800-11161000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr8:11152800-11161000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:11153000-11157000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:11153000-11160800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr8:11153200-11158000	Strong transcription	Fetal Intestine Large	intestine
35	chr8:11153200-11159200	Strong transcription	Fetal Thymus	thymus
36	chr8:11153400-11159000	Strong transcription	HSMM	muscle
37	chr8:11153400-11165400	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:11153800-11157400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr8:11154000-11162200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:11154000-11164000	Weak transcription	Fetal Brain Male	brain
41	chr8:11154000-11166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr8:11154000-11167000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:11154200-11156600	Strong transcription	Brain Germinal Matrix	brain
44	chr8:11154200-11156800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr8:11154200-11157200	Weak transcription	Osteobl	bone
46	chr8:11154200-11157400	Weak transcription	HepG2	liver
47	chr8:11154200-11157600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:11154200-11158800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:11154200-11160800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:11154200-11161200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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