Variant report

Variant	rs17154155
Chromosome Location	chr7:80234243-80234244
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10480808	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs1049654	0.82[CEU][hapmap]
rs1054516	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1054517	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1194177	0.86[EUR][1000 genomes]
rs1194178	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1194179	0.86[EUR][1000 genomes]
rs1194182	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12706912	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1358337	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1413661	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1527479	0.82[CEU][hapmap]
rs1722502	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1722505	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1761661	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1761662	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1761665	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1761667	0.81[EUR][1000 genomes]
rs1953298	0.82[CEU][hapmap]
rs2366855	0.82[CEU][hapmap]
rs3211839	0.86[EUR][1000 genomes]
rs3211842	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3211849	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs3211870	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs3211885	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3212160	0.85[CEU][hapmap]
rs4626520	0.94[ASN][1000 genomes]
rs4731643	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs6961024	0.81[EUR][1000 genomes]
rs6961069	0.96[EUR][1000 genomes]
rs7807607	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs819435	0.85[EUR][1000 genomes]
rs819436	0.85[EUR][1000 genomes]
rs819437	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80227400-80238200	Weak transcription	Small Intestine	intestine
2	chr7:80230200-80234800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:80230200-80237000	Weak transcription	Gastric	stomach
4	chr7:80231200-80236400	Active TSS	Right Atrium	heart
5	chr7:80231400-80235800	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr7:80231800-80234800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:80231800-80236600	Active TSS	Adipose Nuclei	Adipose
8	chr7:80231800-80240200	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:80232000-80236000	Weak transcription	Fetal Heart	heart
10	chr7:80232400-80235800	Weak transcription	Fetal Lung	lung
11	chr7:80232800-80234600	Weak transcription	Left Ventricle	heart
12	chr7:80233600-80236800	Weak transcription	Right Ventricle	heart
13	chr7:80233800-80234600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:80234000-80235000	Weak transcription	Psoas Muscle	Psoas
15	chr7:80234000-80235600	Weak transcription	Fetal Intestine Large	intestine
16	chr7:80234000-80235800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:80234000-80236000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:80234000-80236800	Weak transcription	Rectal Mucosa Donor 31	rectum

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