Variant report

Variant	rs17154577
Chromosome Location	chr7:80508289-80508290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80487641..80491153-chr7:80504899..80508832,4	MCF-7	breast:
2	chr7:80507362..80509757-chr7:80548631..80551199,3	MCF-7	breast:
3	chr7:80506428..80508566-chr7:80546929..80548569,2	MCF-7	breast:
4	chr7:80501427..80504324-chr7:80507328..80509549,2	MCF-7	breast:
5	chr7:80507279..80509626-chr7:80810573..80812155,2	MCF-7	breast:
6	chr7:80506267..80508460-chr7:81086142..81087686,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17154601	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028776	chr7:80414636-80555284	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80460400-80514600	Weak transcription	Left Ventricle	heart
2	chr7:80471800-80532600	Weak transcription	Fetal Stomach	stomach
3	chr7:80499600-80512600	Weak transcription	Ovary	ovary
4	chr7:80500200-80526200	Weak transcription	Psoas Muscle	Psoas
5	chr7:80500200-80534200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:80500400-80512400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:80500400-80514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:80501000-80512200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:80501000-80513000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:80501000-80513800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:80502800-80509800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:80503000-80510400	Weak transcription	Placenta	Placenta
13	chr7:80505400-80508600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:80506000-80512600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:80506400-80509800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:80506600-80508600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:80506600-80509400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:80506600-80509400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:80506600-80510800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:80506600-80510800	Weak transcription	NHEK	skin
21	chr7:80506600-80511000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:80506600-80511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:80506600-80512600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:80506600-80512600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:80506600-80512800	Weak transcription	Fetal Brain Female	brain
26	chr7:80506600-80524200	Weak transcription	Fetal Brain Male	brain
27	chr7:80506800-80508600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:80506800-80509200	Weak transcription	Fetal Heart	heart
29	chr7:80506800-80509200	Weak transcription	Fetal Lung	lung
30	chr7:80506800-80510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:80506800-80512200	Weak transcription	Adipose Nuclei	Adipose
32	chr7:80506800-80512200	Weak transcription	Fetal Intestine Large	intestine
33	chr7:80506800-80512400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:80506800-80520400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr7:80507000-80508600	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:80507000-80511400	Weak transcription	Hela-S3	cervix
37	chr7:80507000-80512200	Weak transcription	Fetal Intestine Small	intestine
38	chr7:80507200-80508600	Weak transcription	HMEC	breast
39	chr7:80507200-80508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:80507200-80510400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:80507200-80511400	Weak transcription	NH-A	brain
42	chr7:80507400-80508600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:80507400-80508800	Weak transcription	NHLF	lung
44	chr7:80507400-80508800	Weak transcription	Osteobl	bone
45	chr7:80507400-80509200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:80507800-80510200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:80507800-80510800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:80507800-80512400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr7:80508000-80508600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:80508000-80509000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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