Variant report

Variant	rs17154725
Chromosome Location	chr10:44453718-44453719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17154665	1.00[AMR][1000 genomes]
rs17154669	1.00[AMR][1000 genomes]
rs17154678	1.00[AMR][1000 genomes]
rs17154733	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44450800-44455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44452400-44456600	Weak transcription	Right Atrium	heart
4	chr10:44453000-44460200	Enhancers	Ovary	ovary
5	chr10:44453400-44454600	Enhancers	Spleen	Spleen
6	chr10:44453400-44455800	Enhancers	Fetal Heart	heart
7	chr10:44453600-44453800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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