Variant report

Variant	rs17154990
Chromosome Location	chr8:8805726-8805727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11787026	1.00[JPT][hapmap]
rs11984720	1.00[AMR][1000 genomes]
rs11990376	1.00[AMR][1000 genomes]
rs11990446	1.00[AMR][1000 genomes]
rs11994497	1.00[AMR][1000 genomes]
rs12114954	1.00[JPT][hapmap]
rs13252797	1.00[JPT][hapmap]
rs17155102	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17702602	1.00[JPT][hapmap]
rs2060045	1.00[JPT][hapmap]
rs56373388	1.00[AMR][1000 genomes]
rs58797442	1.00[AMR][1000 genomes]
rs59137033	1.00[AMR][1000 genomes]
rs61730229	1.00[AMR][1000 genomes]
rs6983343	1.00[AMR][1000 genomes]
rs6983877	1.00[JPT][hapmap]
rs7007282	1.00[AMR][1000 genomes]
rs73518367	1.00[AMR][1000 genomes]
rs73518386	1.00[AMR][1000 genomes]
rs73522591	1.00[AMR][1000 genomes]
rs73522596	1.00[AMR][1000 genomes]
rs73524091	1.00[AMR][1000 genomes]
rs73524209	1.00[AMR][1000 genomes]
rs73524213	1.00[AMR][1000 genomes]
rs73524221	1.00[AMR][1000 genomes]
rs73524263	1.00[AMR][1000 genomes]
rs73524268	1.00[AMR][1000 genomes]
rs73526008	1.00[AMR][1000 genomes]
rs7824053	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7836156	1.00[JPT][hapmap]
rs7839186	1.00[AMR][1000 genomes]
rs9987276	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1017388	chr8:8759494-8826714	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1017238	chr8:8760138-8831662	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1026913	chr8:8773659-8838256	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8781200-8815200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr8:8781600-8816600	Weak transcription	Primary T cells from cord blood	blood
3	chr8:8786200-8820600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:8794200-8807200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:8796800-8819600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:8800200-8810000	Weak transcription	Fetal Brain Male	brain
7	chr8:8800400-8806000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:8800400-8813200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:8802600-8805800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:8803400-8807000	Weak transcription	Stomach Mucosa	stomach
11	chr8:8803400-8807200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:8805000-8807600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:8805600-8806200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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