Variant report

Variant	rs17155692
Chromosome Location	chr7:108047445-108047446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108043723..108045538-chr7:108047236..108048923,2	MCF-7	breast:
2	chr7:108016249..108018271-chr7:108046032..108048328,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10228864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10232143	1.00[ASN][1000 genomes]
rs10269351	1.00[YRI][hapmap]
rs995310	0.82[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108036400-108049200	Weak transcription	Spleen	Spleen
2	chr7:108036600-108048000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:108036600-108048000	Weak transcription	Pancreas	Pancrea
4	chr7:108036600-108054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:108040000-108048000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:108040200-108048800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:108044000-108050200	Enhancers	Fetal Brain Male	brain
8	chr7:108044400-108047800	Weak transcription	HUVEC	blood vessel
9	chr7:108044600-108054600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:108044800-108047800	Weak transcription	Fetal Brain Female	brain
11	chr7:108045200-108050000	Enhancers	Fetal Lung	lung
12	chr7:108045400-108049200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:108045800-108048000	Weak transcription	Placenta	Placenta
14	chr7:108046000-108048000	Weak transcription	Brain Substantia Nigra	brain
15	chr7:108046000-108049000	Enhancers	A549	lung
16	chr7:108046600-108047800	Enhancers	Liver	Liver
17	chr7:108046600-108048200	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:108046800-108047800	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:108046800-108049000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:108046800-108049600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:108046800-108054200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:108047000-108048000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:108047000-108048000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:108047000-108048000	Enhancers	Ovary	ovary
25	chr7:108047000-108049400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:108047000-108054200	Weak transcription	NHLF	lung
27	chr7:108047200-108048600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:108047200-108049400	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:108047400-108049000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:108047400-108054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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