Variant report

Variant	rs17155706
Chromosome Location	chr7:108057573-108057574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108054248..108057900-chr7:108068091..108071582,3	MCF-7	breast:
2	chr7:108056974..108058876-chr7:108094408..108096175,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10228864	0.82[EUR][1000 genomes]
rs10232143	0.87[EUR][1000 genomes]
rs1034823	0.95[EUR][1000 genomes]
rs10487852	1.00[CEU][hapmap]
rs16872542	0.95[EUR][1000 genomes]
rs17155713	0.95[EUR][1000 genomes]
rs17155715	0.85[EUR][1000 genomes]
rs73424113	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108054200-108057600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108054200-108057600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:108054200-108057600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:108054200-108057600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:108054200-108057800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:108054200-108058600	Enhancers	Brain Anterior Caudate	brain
7	chr7:108054200-108058800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:108054200-108059200	Enhancers	HUVEC	blood vessel
9	chr7:108054600-108057600	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:108054800-108061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:108055000-108062600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:108055200-108057800	Enhancers	Fetal Brain Male	brain
13	chr7:108055400-108058800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:108055400-108060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:108055800-108058400	Weak transcription	Pancreas	Pancrea
16	chr7:108056000-108057600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:108056200-108057600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:108056200-108057600	Enhancers	Brain Germinal Matrix	brain
19	chr7:108056200-108057600	Enhancers	HMEC	breast
20	chr7:108056200-108057600	Enhancers	NHEK	skin
21	chr7:108056400-108057800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:108056400-108057800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:108056400-108057800	Flanking Active TSS	A549	lung
24	chr7:108056400-108058000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr7:108056600-108057800	Enhancers	Brain Hippocampus Middle	brain
26	chr7:108056600-108062400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr7:108056800-108057600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr7:108056800-108058600	Enhancers	Primary B cells from peripheral blood	blood
29	chr7:108056800-108060000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:108056800-108071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:108057000-108057600	Enhancers	Brain Angular Gyrus	brain
32	chr7:108057000-108057600	Enhancers	Brain Substantia Nigra	brain
33	chr7:108057000-108057600	Enhancers	Fetal Brain Female	brain
34	chr7:108057000-108058000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:108057000-108059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:108057000-108059800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:108057000-108062400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:108057200-108057800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:108057200-108058000	Enhancers	Primary B cells from cord blood	blood
40	chr7:108057200-108058000	Enhancers	HSMM	muscle
41	chr7:108057200-108058200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
42	chr7:108057200-108060000	Weak transcription	Osteobl	bone
43	chr7:108057200-108067200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:108057400-108057800	Enhancers	GM12878-XiMat	blood
45	chr7:108057400-108058400	Weak transcription	NH-A	brain
46	chr7:108057400-108058600	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr7:108057400-108058600	Enhancers	HSMMtube	muscle
48	chr7:108057400-108058800	Weak transcription	K562	blood
49	chr7:108057400-108059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:108057400-108059400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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