Variant report

Variant	rs17156055
Chromosome Location	chr7:27979342-27979343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27972439..27974031-chr7:27977585..27979781,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10486570	0.90[JPT][hapmap]
rs11763181	1.00[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17156058	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17156062	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17156099	0.90[JPT][hapmap]
rs17156100	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs17156102	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs2057671	0.90[JPT][hapmap]
rs4722750	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs73299485	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs757135	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27956600-27979800	Weak transcription	Aorta	Aorta
4	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:27961000-27983400	Weak transcription	NH-A	brain
6	chr7:27970000-27980000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:27973600-27982600	Weak transcription	Spleen	Spleen
8	chr7:27973800-27986200	Weak transcription	HSMM	muscle
9	chr7:27974000-27980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:27974000-27981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:27974000-27981400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:27974000-27990800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:27974400-27980200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:27975600-27981000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:27975600-27984800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:27976200-27987400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:27976400-27981800	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:27976600-27981800	Weak transcription	Fetal Lung	lung
19	chr7:27976600-27991600	Weak transcription	Osteobl	bone
20	chr7:27976800-27982200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:27977000-27979800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:27977000-27981000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:27977000-27983600	Weak transcription	Psoas Muscle	Psoas
24	chr7:27977000-27983600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:27977000-28001400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:27977200-27980000	Weak transcription	Primary B cells from cord blood	blood
27	chr7:27977200-27981000	Weak transcription	NHDF-Ad	bronchial
28	chr7:27977200-27986400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:27977400-27981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:27977400-27981000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:27977400-27991600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:27977800-27980000	Weak transcription	Pancreas	Pancrea
33	chr7:27978600-27979600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:27978600-27993000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:27978800-27979600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:27979000-27979800	Enhancers	Brain Cingulate Gyrus	brain
37	chr7:27979000-27980000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:27979000-27980200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:27979000-27980400	Enhancers	Fetal Heart	heart
40	chr7:27979000-27980400	ZNF genes & repeats	Fetal Stomach	stomach
41	chr7:27979000-27980600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr7:27979000-27981800	Enhancers	Colon Smooth Muscle	Colon
43	chr7:27979000-27984800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:27979200-27979400	Enhancers	Brain Substantia Nigra	brain
45	chr7:27979200-27979600	Enhancers	Brain Hippocampus Middle	brain
46	chr7:27979200-27980200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:27979200-27980200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr7:27979200-27980400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:27979200-27980400	Enhancers	Left Ventricle	heart
50	chr7:27979200-27981200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links