Variant report

Variant	rs17156179
Chromosome Location	chr10:188764-188765
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:187321..189950-chr10:190667..193548,2	MCF-7	breast:
2	chr10:178614..180184-chr10:187644..190496,2	K562	blood:
3	chr10:185579..190564-chr10:192316..195395,6	MCF-7	breast:
4	chr10:187550..189411-chr7:33100876..33103151,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122643	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:183000-188800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr10:183000-191200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:183000-192600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:183000-196400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:183200-192200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:183200-205400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:183400-188800	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:183400-194600	Weak transcription	Fetal Stomach	stomach
9	chr10:183400-194600	Weak transcription	Gastric	stomach
10	chr10:183400-199400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:183400-200800	Weak transcription	Thymus	Thymus
12	chr10:183600-199000	Weak transcription	HSMM	muscle
13	chr10:183800-189000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:183800-191800	Weak transcription	Dnd41	blood
15	chr10:184400-188800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:184400-189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:184400-191400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:184400-199600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:184400-200200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:184600-200000	Weak transcription	NHLF	lung
21	chr10:185000-189800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:185000-189800	Weak transcription	Psoas Muscle	Psoas
23	chr10:185200-190200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:185200-198000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:185600-189200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:186000-188800	Weak transcription	Right Atrium	heart
27	chr10:186200-199800	Weak transcription	Right Ventricle	heart
28	chr10:187200-189000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:187200-189200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:187400-191200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:187400-193600	Weak transcription	Fetal Lung	lung
32	chr10:187400-194400	Weak transcription	HepG2	liver
33	chr10:187400-194600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:187600-191400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:187800-189000	Enhancers	Small Intestine	intestine
36	chr10:187800-189200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:187800-189400	Enhancers	Fetal Intestine Small	intestine
38	chr10:188000-188800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:188000-189000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:188000-189000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:188000-189000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr10:188000-189000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:188000-189200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:188000-189200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:188000-200400	Weak transcription	Primary B cells from cord blood	blood
46	chr10:188200-188800	Enhancers	A549	lung
47	chr10:188200-188800	Enhancers	Hela-S3	cervix
48	chr10:188200-188800	Enhancers	NHEK	skin
49	chr10:188200-189400	Enhancers	Fetal Heart	heart
50	chr10:188400-188800	Weak transcription	Brain Germinal Matrix	brain

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