Variant report

Variant	rs17156287
Chromosome Location	chr10:44880994-44880995
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr10:44880604-44881305	H1-hESC	embryonic stem cell:	n/a	chr10:44880929-44880941 chr10:44881076-44881086
2	E2F6	chr10:44879730-44881139	H1-hESC	embryonic stem cell:	n/a	chr10:44880929-44880941 chr10:44880094-44880106 chr10:44881076-44881086
3	MAX	chr10:44879681-44881198	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr10:44879546-44881252	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr10:44880980-44881130	AG04449	skin:	n/a	n/a
6	SIN3A	chr10:44880653-44881106	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr10:44880796-44881429	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CXCL12	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17482472	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17879548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17880358	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17880863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17881575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17883339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17885289	1.00[ASN][1000 genomes]
rs197452	1.00[ASN][1000 genomes]
rs266088	0.83[ASN][1000 genomes]
rs2839680	0.96[ASN][1000 genomes]
rs2839682	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2839684	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2839686	1.00[ASN][1000 genomes]
rs2861442	0.96[ASN][1000 genomes]
rs3780891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093481	0.96[ASN][1000 genomes]
rs72790861	1.00[ASN][1000 genomes]
rs72790862	1.00[ASN][1000 genomes]
rs728142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv550699	chr10:44868257-44882203	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv895090	chr10:44874867-44884959	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv895092	chr10:44875166-44884959	Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895093	chr10:44876461-44884959	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv895094	chr10:44876499-44884959	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv895095	chr10:44876586-44884959	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv895098	chr10:44877501-44881202	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv550700	chr10:44878064-44882203	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv895099	chr10:44878114-44884959	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv895100	chr10:44878835-44884959	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3375268	chr10:44878846-44883969	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3421241	chr10:44879371-44881919	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44877600-44881000	Bivalent/Poised TSS	Fetal Thymus	thymus
2	chr10:44877600-44881200	Active TSS	Rectal Smooth Muscle	rectum
3	chr10:44877600-44881200	Active TSS	Right Atrium	heart
4	chr10:44877800-44881000	Active TSS	NHDF-Ad	bronchial
5	chr10:44877800-44881200	Active TSS	Left Ventricle	heart
6	chr10:44877800-44881400	Active TSS	Fetal Kidney	kidney
7	chr10:44878400-44881200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:44878600-44881200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:44878600-44881200	Enhancers	Fetal Heart	heart
10	chr10:44878600-44881600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:44878800-44881000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44878800-44881200	Active TSS	Ovary	ovary
13	chr10:44878800-44881800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:44879000-44881000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:44879000-44881000	Active TSS	Psoas Muscle	Psoas
16	chr10:44879000-44881200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr10:44879000-44881400	Active TSS	Brain Anterior Caudate	brain
18	chr10:44879000-44882400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr10:44879200-44881000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:44879200-44881200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:44879200-44881200	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
22	chr10:44879400-44881000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:44879400-44881000	Active TSS	NHLF	lung
24	chr10:44879400-44882600	Bivalent Enhancer	Fetal Brain Male	brain
25	chr10:44879600-44881000	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr10:44879600-44881000	Active TSS	Colon Smooth Muscle	Colon
27	chr10:44879600-44881200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:44879600-44881200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:44879600-44881200	Bivalent/Poised TSS	Small Intestine	intestine
30	chr10:44879600-44881400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:44879600-44881400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
32	chr10:44879600-44881400	Bivalent/Poised TSS	Fetal Stomach	stomach
33	chr10:44879600-44881600	Active TSS	Osteobl	bone
34	chr10:44879600-44882400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr10:44879800-44881200	Active TSS	H9 Cell Line	embryonic stem cell
36	chr10:44879800-44881200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
37	chr10:44879800-44882200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:44880000-44881000	Active TSS	GM12878-XiMat	blood
39	chr10:44880000-44882400	Bivalent/Poised TSS	Fetal Brain Female	brain
40	chr10:44880200-44881000	Active TSS	Brain Cingulate Gyrus	brain
41	chr10:44880200-44881000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
42	chr10:44880200-44881000	Active TSS	Pancreas	Pancrea
43	chr10:44880200-44881200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:44880200-44881200	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr10:44880200-44881800	Bivalent Enhancer	Placenta	Placenta
46	chr10:44880200-44882600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:44880400-44881000	Bivalent/Poised TSS	Esophagus	oesophagus
48	chr10:44880400-44881000	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr10:44880400-44881000	Active TSS	HSMM	muscle
50	chr10:44880400-44881200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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